Variant report

Variant	rs10080925
Chromosome Location	chr6:109660592-109660593
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:109660514..109663248-chr6:109671174..109674117,2	K562	blood:
2	chr6:109624816..109627658-chr6:109659263..109661556,2	K562	blood:
3	chr6:109656306..109660874-chr6:109662231..109666521,7	MCF-7	breast:
4	chr6:109655737..109658352-chr6:109659760..109662191,3	K562	blood:
5	chr6:109659415..109661984-chr6:109702237..109705687,4	MCF-7	breast:
6	chr6:109656032..109659893-chr6:109659967..109664099,6	MCF-7	breast:
7	chr6:109635700..109637262-chr6:109660535..109662631,2	K562	blood:
8	chr6:109571423..109573781-chr6:109659713..109661931,2	MCF-7	breast:
9	chr6:109660483..109663037-chr6:109663413..109665260,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000203799	Chromatin interaction
ENSG00000135535	Chromatin interaction
ENSG00000201023	Chromatin interaction
ENSG00000260273	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs13437492	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1476386	0.85[CEU][hapmap]
rs17070554	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17070590	1.00[CEU][hapmap];0.88[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2146411	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2177092	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2275649	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757229	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3757237	0.87[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.88[ASN][1000 genomes]
rs41288560	0.80[ASN][1000 genomes]
rs4946968	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4946971	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946972	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4946975	1.00[CEU][hapmap]
rs4946977	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.83[EUR][1000 genomes]
rs6907769	0.84[ASN][1000 genomes]
rs749621	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs752260	0.83[EUR][1000 genomes]
rs9480934	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9480954	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9480959	0.85[CEU][hapmap]
rs9487074	0.86[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9487083	0.87[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487087	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487099	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487106	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9487109	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
2	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
3	chr6:109654000-109669400	Weak transcription	Small Intestine	intestine
4	chr6:109654200-109671000	Weak transcription	Spleen	Spleen
5	chr6:109654200-109675000	Weak transcription	Primary B cells from peripheral blood	blood
6	chr6:109654200-109676200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:109654400-109660600	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:109654400-109668800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr6:109656800-109662600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:109657600-109660600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr6:109657800-109661000	Weak transcription	Placenta	Placenta
12	chr6:109657800-109662200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr6:109657800-109662200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:109657800-109671000	Weak transcription	Lung	lung
15	chr6:109658000-109661400	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr6:109658200-109661000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:109658200-109663600	Weak transcription	Left Ventricle	heart
18	chr6:109658400-109665200	Weak transcription	Fetal Intestine Small	intestine
19	chr6:109658400-109669200	Weak transcription	Liver	Liver
20	chr6:109658600-109661400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:109658600-109662200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr6:109658600-109662200	Weak transcription	Right Ventricle	heart
23	chr6:109658600-109668200	Weak transcription	Colonic Mucosa	Colon
24	chr6:109658600-109670600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr6:109658800-109660800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr6:109658800-109661000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:109658800-109661000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:109658800-109662000	Weak transcription	Adipose Nuclei	Adipose
29	chr6:109658800-109663600	Weak transcription	Gastric	stomach
30	chr6:109658800-109663600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:109658800-109670600	Weak transcription	Right Atrium	heart
32	chr6:109658800-109677000	Weak transcription	Fetal Stomach	stomach
33	chr6:109659000-109661400	Weak transcription	Stomach Mucosa	stomach
34	chr6:109659400-109661200	Enhancers	K562	blood
35	chr6:109660200-109661400	Enhancers	Fetal Thymus	thymus
36	chr6:109660200-109677200	Weak transcription	Thymus	Thymus
37	chr6:109660400-109661200	Enhancers	Pancreas	Pancrea
38	chr6:109660400-109662000	Enhancers	Rectal Mucosa Donor 31	rectum
39	chr6:109660400-109674600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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