Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10831225	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11020802	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11020803	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12224966	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1257769	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1272743	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs3017077	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs474577	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs509723	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs509744	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs518640	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs530569	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs535801	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs540199	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs550255	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs563807	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs588701	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59678918	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625245	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs639311	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs641936	0.88[EUR][1000 genomes]
rs654718	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs657249	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs680695	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs948575	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523083	chr11:93962121-94150790	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv832233	chr11:93981434-94158471	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:25)

SNP	Gene	Cis/trans	Tissue	Source
rs56108804	RP11-685N10.1	cis	Adipose Subcutaneous	GTEx
rs56108804	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs56108804	MRE11A	cis	Adipose Subcutaneous	GTEx
rs56108804	MRE11A	cis	Artery Tibial	GTEx
rs56108804	MRE11A	cis	Skin Sun Exposed Lower leg	GTEx
rs56108804	MRE11A	cis	Nerve Tibial	GTEx
rs56108804	RP11-685N10.1	cis	Skin Sun Exposed Lower leg	GTEx
rs56108804	MRE11A	cis	lung	GTEx
rs56108804	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs56108804	MRE11A	cis	Esophagus Muscularis	GTEx
rs56108804	MRE11A	cis	Whole Blood	GTEx
rs56108804	RP11-685N10.1	cis	Stomach	GTEx
rs56108804	RP11-685N10.1	cis	lung	GTEx
rs56108804	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs56108804	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs56108804	MRE11A	cis	Heart Left Ventricle	GTEx
rs56108804	RP11-685N10.1	cis	Artery Tibial	GTEx
rs56108804	MRE11A	cis	Stomach	GTEx
rs56108804	MRE11A	cis	Artery Aorta	GTEx
rs56108804	RP11-685N10.1	cis	Muscle Skeletal	GTEx
rs56108804	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs56108804	RP11-685N10.1	cis	Thyroid	GTEx
rs56108804	MRE11A	cis	Esophagus Mucosa	GTEx
rs56108804	RP11-685N10.1	cis	Artery Aorta	GTEx
rs56108804	MRE11A	cis	Thyroid	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94119600-94132400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:94130600-94130800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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