Variant report

Variant	rs509723
Chromosome Location	chr11:94248581-94248582
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 28 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10831225	0.88[CEU][hapmap];0.83[JPT][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11020802	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11020803	0.88[CEU][hapmap];0.95[MEX][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12224966	0.88[CEU][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1257769	0.88[AMR][1000 genomes]
rs1272743	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3017077	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs474577	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs509744	0.88[AMR][1000 genomes]
rs518640	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs521349	0.93[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.94[LWK][hapmap];0.96[MEX][hapmap];0.90[MKK][hapmap];0.98[TSI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs525057	0.84[CEU][hapmap]
rs525921	0.84[CEU][hapmap]
rs530569	0.86[AMR][1000 genomes]
rs535801	0.91[MEX][hapmap];0.89[AMR][1000 genomes]
rs540199	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs550255	0.88[CEU][hapmap];0.87[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56108804	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs563807	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs588701	0.88[CEU][hapmap];0.91[MEX][hapmap];0.82[TSI][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59678918	0.85[AMR][1000 genomes]
rs616823	0.80[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs625245	0.88[CEU][hapmap];0.95[MEX][hapmap];0.81[TSI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs628079	0.84[CEU][hapmap]
rs639311	0.87[AMR][1000 genomes]
rs641936	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs647484	0.90[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs654718	0.88[CEU][hapmap];0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs657249	0.85[AMR][1000 genomes]
rs680695	0.89[AMR][1000 genomes]
rs693815	0.84[CEU][hapmap]
rs695093	0.84[CEU][hapmap]
rs948575	0.88[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]

mRNA abundance (count:28)

SNP	Gene	Cis/trans	Tissue	Source
rs509723	MRE11A	cis	Artery Aorta	GTEx
rs509723	MRE11A	cis	parietal	SCAN
rs509723	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs509723	MRE11A	cis	Heart Left Ventricle	GTEx
rs509723	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs509723	MRE11A	cis	lung	GTEx
rs509723	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs509723	MRE11A	cis	Skin Sun Exposed Lower leg	GTEx
rs509723	MRE11A	cis	Nerve Tibial	GTEx
rs509723	MRE11A	cis	Esophagus Muscularis	GTEx
rs509723	RP11-685N10.1	cis	lung	GTEx
rs509723	RP11-685N10.1	cis	Stomach	GTEx
rs509723	MRE11A	cis	cerebellum	SCAN
rs509723	MAML2	cis	cerebellum	SCAN
rs509723	MAML2	cis	parietal	SCAN
rs509723	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs509723	MRE11A	cis	Thyroid	GTEx
rs509723	MRE11A	cis	Adipose Subcutaneous	GTEx
rs509723	MRE11A	cis	Esophagus Mucosa	GTEx
rs509723	MRE11A	cis	Artery Tibial	GTEx
rs509723	RP11-685N10.1	cis	Skin Sun Exposed Lower leg	GTEx
rs509723	MRE11A	cis	Whole Blood	GTEx
rs509723	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs509723	RP11-685N10.1	cis	Thyroid	GTEx
rs509723	RP11-685N10.1	cis	Artery Tibial	GTEx
rs509723	RP11-685N10.1	cis	Adipose Subcutaneous	GTEx
rs509723	RP11-685N10.1	cis	Artery Aorta	GTEx
rs509723	MRE11A	cis	Stomach	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246200-94252800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:94246800-94252800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:94246800-94252800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
6	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:94247600-94248800	Weak transcription	HepG2	liver

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