Variant report

Variant	rs628079
Chromosome Location	chr11:94252821-94252822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94251536..94253179-chr11:94279297..94281845,2	MCF-7	breast:
2	chr11:94252622..94253254-chr11:94296474..94297392,2	MCF-7	breast:
3	chr11:94248605..94250717-chr11:94251159..94253101,2	K562	blood:
4	chr11:94252606..94260040-chr11:94275780..94279036,7	MCF-7	breast:
5	chr11:94252149..94252880-chr11:94330831..94331368,2	MCF-7	breast:
6	chr11:94252767..94253301-chr11:94330784..94331624,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 18 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1014666	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs1270146	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs2508460	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2508782	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2508784	0.85[CEU][hapmap]
rs2509321	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2509324	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2509943	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4342993	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4593974	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs472344	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs473297	0.84[CEU][hapmap];0.80[EUR][1000 genomes]
rs484590	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs486556	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs489200	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs492001	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs493982	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs496190	0.81[EUR][1000 genomes]
rs496797	0.80[EUR][1000 genomes]
rs497763	0.88[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs500558	0.84[CEU][hapmap]
rs521349	0.88[CEU][hapmap]
rs524350	0.80[EUR][1000 genomes]
rs525057	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs525921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs536768	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs544337	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs547207	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs553634	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs571044	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs582049	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs582077	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs595127	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs610899	0.92[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs612075	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs612632	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614424	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621562	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs628164	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs628728	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629119	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs629156	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs642744	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs647249	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6483341	0.84[CEU][hapmap];0.84[JPT][hapmap]
rs658234	0.81[CEU][hapmap]
rs659349	0.83[AMR][1000 genomes]
rs659489	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662572	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs682213	0.85[CEU][hapmap]
rs684507	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs693815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs695093	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:18)

SNP	Gene	Cis/trans	Tissue	Source
rs628079	RP11-685N10.1	cis	Artery Tibial	GTEx
rs628079	MRE11A	cis	Nerve Tibial	GTEx
rs628079	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs628079	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs628079	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs628079	MRE11A	cis	Artery Tibial	GTEx
rs628079	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs628079	MRE11A	cis	Esophagus Mucosa	GTEx
rs628079	RP11-685N10.1	cis	Skin Sun Exposed Lower leg	GTEx
rs628079	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs628079	MRE11A	cis	Thyroid	GTEx
rs628079	MRE11A	cis	Adipose Subcutaneous	GTEx
rs628079	MRE11A	cis	lung	GTEx
rs628079	MRE11A	cis	Heart Left Ventricle	GTEx
rs628079	MRE11A	cis	Skin Sun Exposed Lower leg	GTEx
rs628079	RP11-685N10.1	cis	Adipose Subcutaneous	GTEx
rs628079	MRE11A	cis	Esophagus Muscularis	GTEx
rs628079	RP11-685N10.1	cis	lung	GTEx

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
3	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
4	chr11:94252000-94253000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:94252600-94253200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr11:94252600-94253200	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr11:94252800-94253000	Active TSS	Brain Anterior Caudate	brain
8	chr11:94252800-94253200	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:94252800-94253200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr11:94252800-94253200	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:94252800-94253200	Enhancers	Duodenum Mucosa	Duodenum
12	chr11:94252800-94253200	Enhancers	Fetal Intestine Large	intestine
13	chr11:94252800-94253200	Enhancers	Rectal Smooth Muscle	rectum
14	chr11:94252800-94253400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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