Variant report

Variant	rs2508782
Chromosome Location	chr11:94269813-94269814
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94268238..94270129-chr11:94275344..94277340,2	MCF-7	breast:
2	chr11:94253806..94255859-chr11:94267409..94270177,3	K562	blood:
3	chr11:94268858..94270975-chr11:94276312..94278364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134627	Chromatin interaction
ENSG00000196371	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 16 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs2508460	0.80[AMR][1000 genomes]
rs2509321	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4342993	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4593974	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs486556	0.81[EUR][1000 genomes]
rs489200	0.82[EUR][1000 genomes]
rs492001	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs525057	0.85[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs525921	0.85[CEU][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs536768	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs544337	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs547207	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs553634	0.81[AMR][1000 genomes]
rs567052	0.81[ASN][1000 genomes]
rs571044	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs582049	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs582077	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs595127	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs610899	0.86[CHB][hapmap];0.82[AMR][1000 genomes]
rs612075	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs612632	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs614424	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs628079	0.85[CEU][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs628164	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs628728	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs629119	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs629156	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs642744	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs647249	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs658234	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs659489	0.80[AMR][1000 genomes]
rs693815	0.85[CEU][hapmap];0.83[MEX][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs695093	0.85[CEU][hapmap];0.83[EUR][1000 genomes]

mRNA abundance (count:16)

SNP	Gene	Cis/trans	Tissue	Source
rs2508782	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs2508782	RP11-685N10.1	cis	Artery Tibial	GTEx
rs2508782	MRE11A	cis	lung	GTEx
rs2508782	MRE11A	cis	Nerve Tibial	GTEx
rs2508782	RP11-685N10.1	cis	lung	GTEx
rs2508782	HEPHL1	cis	cerebellum	SCAN
rs2508782	GPR83	cis	parietal	SCAN
rs2508782	MRE11A	cis	parietal	SCAN
rs2508782	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs2508782	MRE11A	cis	Adipose Subcutaneous	GTEx
rs2508782	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs2508782	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs2508782	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs2508782	MRE11A	cis	Artery Tibial	GTEx
rs2508782	MRE11A	cis	cerebellum	SCAN
rs2508782	MRE11A	cis	Esophagus Muscularis	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94266400-94271200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr11:94267600-94270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:94267600-94270400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:94267600-94276200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr11:94267600-94276400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:94267800-94270200	Weak transcription	Fetal Lung	lung
7	chr11:94267800-94270200	Weak transcription	Right Atrium	heart
8	chr11:94268000-94270200	Weak transcription	Adipose Nuclei	Adipose
9	chr11:94268000-94270600	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr11:94268400-94270000	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr11:94268600-94271200	Enhancers	Stomach Mucosa	stomach
12	chr11:94268800-94271400	Enhancers	Fetal Intestine Small	intestine
13	chr11:94268800-94273400	Enhancers	Fetal Intestine Large	intestine
14	chr11:94268800-94273800	Enhancers	Duodenum Mucosa	Duodenum
15	chr11:94269200-94270000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr11:94269200-94270200	Weak transcription	Small Intestine	intestine
17	chr11:94269400-94270000	Active TSS	Rectal Mucosa Donor 29	rectum
18	chr11:94269400-94270200	Enhancers	Osteobl	bone
19	chr11:94269400-94271000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:94269400-94271200	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:94269600-94270400	Enhancers	Aorta	Aorta
22	chr11:94269600-94271000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr11:94269600-94271200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr11:94269800-94270800	Weak transcription	HSMMtube	muscle
25	chr11:94269800-94271200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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