Variant report

Variant	rs659489
Chromosome Location	chr11:94252325-94252326
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94251536..94253179-chr11:94279297..94281845,2	MCF-7	breast:
2	chr11:94248605..94250717-chr11:94251159..94253101,2	K562	blood:
3	chr11:94252149..94252880-chr11:94330831..94331368,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 17 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs2508460	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2508782	0.80[AMR][1000 genomes]
rs2509321	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2509324	0.91[ASN][1000 genomes]
rs4342993	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4593974	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs484590	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs486556	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs489200	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs492001	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs525057	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs525921	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs536768	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs544337	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs547207	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs553634	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs571044	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs582049	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs582077	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs595127	0.80[AMR][1000 genomes]
rs610899	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs612075	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs612632	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs614424	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs621562	0.88[ASN][1000 genomes]
rs628079	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs628164	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs628728	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs629119	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs629156	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs642744	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs647249	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662572	0.88[ASN][1000 genomes]
rs693815	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs695093	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

mRNA abundance (count:17)

SNP	Gene	Cis/trans	Tissue	Source
rs659489	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs659489	RP11-685N10.1	cis	Adipose Subcutaneous	GTEx
rs659489	MRE11A	cis	Nerve Tibial	GTEx
rs659489	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs659489	RP11-685N10.1	cis	lung	GTEx
rs659489	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs659489	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs659489	MRE11A	cis	Artery Tibial	GTEx
rs659489	MRE11A	cis	Skin Sun Exposed Lower leg	GTEx
rs659489	MRE11A	cis	Esophagus Mucosa	GTEx
rs659489	MRE11A	cis	Heart Left Ventricle	GTEx
rs659489	MRE11A	cis	lung	GTEx
rs659489	MRE11A	cis	Esophagus Muscularis	GTEx
rs659489	MRE11A	cis	Thyroid	GTEx
rs659489	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs659489	MRE11A	cis	Adipose Subcutaneous	GTEx
rs659489	RP11-685N10.1	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246200-94252800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:94246800-94252800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:94246800-94252800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
6	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:94252000-94253000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links