Variant report

Variant	rs571044
Chromosome Location	chr11:94252680-94252681
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:94251536..94253179-chr11:94279297..94281845,2	MCF-7	breast:
2	chr11:94252622..94253254-chr11:94296474..94297392,2	MCF-7	breast:
3	chr11:94248605..94250717-chr11:94251159..94253101,2	K562	blood:
4	chr11:94252606..94260040-chr11:94275780..94279036,7	MCF-7	breast:
5	chr11:94252149..94252880-chr11:94330831..94331368,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000196371	Chromatin interaction
ENSG00000134627	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs1014666	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs11020799	0.83[AMR][1000 genomes]
rs1270146	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2508460	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2508782	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs2508784	0.87[CEU][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2509321	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2509324	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4342993	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4593974	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs472344	0.87[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs473297	0.86[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs475531	0.83[EUR][1000 genomes]
rs476137	0.83[AMR][1000 genomes]
rs482629	0.83[EUR][1000 genomes]
rs484590	0.90[ASN][1000 genomes]
rs486556	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs489200	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs492001	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs493982	0.81[EUR][1000 genomes]
rs496190	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs496797	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs497763	0.91[CEU][hapmap];0.80[EUR][1000 genomes]
rs500558	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs521349	0.83[CEU][hapmap]
rs524350	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs525057	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs525921	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs536768	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs544337	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs547207	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs553634	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs557148	0.83[AMR][1000 genomes]
rs582049	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs582077	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs595127	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs610899	0.96[CEU][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs612075	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs612632	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs614424	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs621562	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs622961	0.81[EUR][1000 genomes]
rs628079	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs628164	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs628728	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs629119	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs629156	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs642744	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs647249	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6483341	0.86[CEU][hapmap];0.84[JPT][hapmap];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs658234	0.87[CEU][hapmap]
rs659489	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs662572	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs682213	0.87[CEU][hapmap];0.83[EUR][1000 genomes]
rs684507	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs693815	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs695093	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs571044	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs571044	MRE11A	cis	Adipose Subcutaneous	GTEx
rs571044	MRE11A	cis	Artery Tibial	GTEx
rs571044	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs571044	MRE11A	cis	lung	GTEx
rs571044	MRE11A	cis	Esophagus Mucosa	GTEx
rs571044	MRE11A	cis	Nerve Tibial	GTEx
rs571044	RP11-685N10.1	cis	lung	GTEx
rs571044	MRE11A	cis	Thyroid	GTEx
rs571044	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs571044	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs571044	RP11-685N10.1	cis	Skin Sun Exposed Lower leg	GTEx
rs571044	MRE11A	cis	Esophagus Muscularis	GTEx
rs571044	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs571044	MRE11A	cis	Heart Left Ventricle	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246200-94252800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:94246800-94252800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:94246800-94252800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
6	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:94252000-94253000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:94252600-94253200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr11:94252600-94253200	Enhancers	Brain Inferior Temporal Lobe	brain

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