Variant report

Variant	rs486556
Chromosome Location	chr11:94248366-94248367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 14 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1014666	0.84[CEU][hapmap];0.87[EUR][1000 genomes]
rs11020799	0.84[AMR][1000 genomes]
rs11020803	0.80[CEU][hapmap]
rs12224966	0.80[CEU][hapmap]
rs1270146	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2508460	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2508782	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2508784	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2509321	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2509324	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2509943	0.82[EUR][1000 genomes]
rs4342993	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4593974	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs472344	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs473297	0.84[CEU][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs475531	0.86[EUR][1000 genomes]
rs476137	0.84[AMR][1000 genomes]
rs482629	0.86[EUR][1000 genomes]
rs484590	0.87[ASN][1000 genomes]
rs489200	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs492001	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs493982	0.83[EUR][1000 genomes]
rs496190	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs496797	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs497763	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs500558	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs521349	0.88[CEU][hapmap]
rs524350	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs525057	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs525921	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs536768	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs544337	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs547207	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs550255	0.80[CEU][hapmap]
rs553634	0.89[EUR][1000 genomes]
rs557148	0.84[AMR][1000 genomes]
rs571044	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs582049	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs582077	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs588701	0.80[CEU][hapmap]
rs595127	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs610899	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs612075	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs612632	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs614424	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs621562	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs622961	0.83[EUR][1000 genomes]
rs625245	0.80[CEU][hapmap]
rs628079	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs628164	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs628728	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs629119	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs629156	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs642744	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs647249	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6483341	0.84[CEU][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs658234	0.81[CEU][hapmap]
rs659489	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs662572	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs682213	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs684507	0.84[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs693815	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs695093	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:14)

SNP	Gene	Cis/trans	Tissue	Source
rs486556	MRE11A	cis	Thyroid	GTEx
rs486556	RP11-685N10.1	cis	Nerve Tibial	GTEx
rs486556	RP11-685N10.1	cis	Esophagus Mucosa	GTEx
rs486556	MRE11A	cis	Esophagus Mucosa	GTEx
rs486556	RP11-685N10.1	cis	Esophagus Muscularis	GTEx
rs486556	MRE11A	cis	lung	GTEx
rs486556	MRE11A	cis	Esophagus Muscularis	GTEx
rs486556	MRE11A	cis	Heart Left Ventricle	GTEx
rs486556	RP11-685N10.1	cis	Heart Left Ventricle	GTEx
rs486556	MRE11A	cis	Nerve Tibial	GTEx
rs486556	MRE11A	Cis_1M	lymphoblastoid	RTeQTL
rs486556	MRE11A	cis	Artery Tibial	GTEx
rs486556	RP11-685N10.1	cis	lung	GTEx
rs486556	MRE11A	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94246000-94267400	Weak transcription	Aorta	Aorta
2	chr11:94246200-94252800	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:94246800-94252800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr11:94246800-94252800	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr11:94246800-94259000	Weak transcription	Stomach Mucosa	stomach
6	chr11:94247200-94258800	Weak transcription	Fetal Intestine Small	intestine
7	chr11:94247600-94248800	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links