Variant report

Variant	rs561117388
Chromosome Location	chr13:94175039-94175040
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:94173270..94175976-chr13:94179967..94182735,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1053035	chr13:93842576-94229732	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541880	chr13:93842576-94229732	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv530636	chr13:93997311-94281707	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv916039	chr13:94035909-94191105	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv562749	chr13:94083352-94263206	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv948714	chr13:94100104-94699435	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv900922	chr13:94105666-94281492	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	esv2758340	chr13:94174654-94348179	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	esv2759958	chr13:94174654-94348179	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:94161800-94176200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr13:94162800-94175800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:94168800-94178000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:94169200-94176200	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr13:94173600-94175200	Enhancers	Fetal Heart	heart
6	chr13:94173800-94175200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr13:94173800-94177600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr13:94173800-94177800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:94173800-94179000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:94174000-94175200	Enhancers	Brain Germinal Matrix	brain
11	chr13:94174000-94176000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr13:94174000-94176000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr13:94174400-94175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:94174400-94175400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr13:94174400-94178400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr13:94174400-94178400	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr13:94174600-94178000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr13:94174800-94175200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr13:94174800-94175200	Enhancers	Fetal Brain Male	brain
20	chr13:94174800-94175200	Enhancers	Ovary	ovary
21	chr13:94174800-94175200	Enhancers	Osteobl	bone
22	chr13:94175000-94175200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr13:94175000-94175200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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