Variant report

Variant	rs56112614
Chromosome Location	chr7:19992603-19992604
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55733725	0.86[AFR][1000 genomes]
rs55887134	1.00[AFR][1000 genomes]
rs56252872	1.00[AFR][1000 genomes]
rs57287675	1.00[AFR][1000 genomes]
rs57469109	0.93[AFR][1000 genomes]
rs58756991	0.93[AFR][1000 genomes]
rs59686194	1.00[AFR][1000 genomes]
rs60389767	1.00[AFR][1000 genomes]
rs60993179	1.00[AFR][1000 genomes]
rs73684911	1.00[AFR][1000 genomes]
rs73684912	1.00[AFR][1000 genomes]
rs73684913	1.00[AFR][1000 genomes]
rs73684915	1.00[AFR][1000 genomes]
rs73684916	1.00[AFR][1000 genomes]
rs73684918	1.00[AFR][1000 genomes]
rs73684920	1.00[AFR][1000 genomes]
rs73684922	1.00[AFR][1000 genomes]
rs73684925	1.00[AFR][1000 genomes]
rs73684927	1.00[AFR][1000 genomes]
rs73684933	1.00[AFR][1000 genomes]
rs73684937	0.86[AFR][1000 genomes]
rs73684938	0.93[AFR][1000 genomes]
rs73684939	1.00[AFR][1000 genomes]
rs73684941	1.00[AFR][1000 genomes]
rs73684947	1.00[AFR][1000 genomes]
rs73684948	0.86[AFR][1000 genomes]
rs73684950	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv887826	chr7:19816240-20033899	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv887830	chr7:19970584-20114589	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19960800-19993200	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr7:19975200-19993200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:19980000-19993600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr7:19982000-19993400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:19983200-19994000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr7:19984800-19995000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:19987800-19993600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr7:19989400-19996200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:19991800-20010000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr7:19992000-19993400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links