Variant report

Variant	rs73684920
Chromosome Location	chr7:19998178-19998179
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:19996523..19999289-chr7:20000423..20003780,3	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs55733725	0.86[AFR][1000 genomes]
rs55887134	1.00[AFR][1000 genomes]
rs56112614	1.00[AFR][1000 genomes]
rs56252872	1.00[AFR][1000 genomes]
rs57287675	1.00[AFR][1000 genomes]
rs57469109	0.93[AFR][1000 genomes]
rs58756991	0.93[AFR][1000 genomes]
rs59686194	1.00[AFR][1000 genomes]
rs60389767	1.00[AFR][1000 genomes]
rs60993179	1.00[AFR][1000 genomes]
rs73684911	1.00[AFR][1000 genomes]
rs73684912	1.00[AFR][1000 genomes]
rs73684913	1.00[AFR][1000 genomes]
rs73684915	1.00[AFR][1000 genomes]
rs73684916	1.00[AFR][1000 genomes]
rs73684918	1.00[AFR][1000 genomes]
rs73684922	1.00[AFR][1000 genomes]
rs73684925	1.00[AFR][1000 genomes]
rs73684927	1.00[AFR][1000 genomes]
rs73684933	1.00[AFR][1000 genomes]
rs73684937	0.86[AFR][1000 genomes]
rs73684938	0.93[AFR][1000 genomes]
rs73684939	1.00[AFR][1000 genomes]
rs73684941	1.00[AFR][1000 genomes]
rs73684947	1.00[AFR][1000 genomes]
rs73684948	0.86[AFR][1000 genomes]
rs73684950	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv887826	chr7:19816240-20033899	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1027445	chr7:19947297-20211733	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	nsv887830	chr7:19970584-20114589	Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19991800-20010000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr7:19993200-19998200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr7:19993400-19998400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr7:19996400-19999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr7:19996400-20000200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:19996600-19998200	Enhancers	Hela-S3	cervix
7	chr7:19996600-19999000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:19996600-20000800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:19996800-19998400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr7:19996800-19999400	Enhancers	HMEC	breast
11	chr7:19997000-19999600	Strong transcription	H9 Cell Line	embryonic stem cell
12	chr7:19997000-19999800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:19997000-20000200	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr7:19997200-19998800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:19997200-19998800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr7:19997200-19999000	Enhancers	HUVEC	blood vessel
17	chr7:19997200-19999400	Enhancers	NHEK	skin
18	chr7:19997400-19998200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr7:19997400-19998600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr7:19997400-19998800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:19997400-19998800	Enhancers	NH-A	brain
22	chr7:19997600-19998200	Flanking Active TSS	A549	lung
23	chr7:19997600-19998200	Enhancers	NHDF-Ad	bronchial
24	chr7:19997600-19998200	Enhancers	Osteobl	bone
25	chr7:19997600-19998600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr7:19997800-19998200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:19998000-19998200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:19998000-19998200	ZNF genes & repeats	Pancreas	Pancrea
29	chr7:19998000-19998400	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr7:19998000-19998400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr7:19998000-20001400	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr7:19998000-20001400	Strong transcription	HUES64 Cell Line	embryonic stem cell

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