The 2.0 version of rSNPBase

Variant report

Variant rs56112729
Chromosome Location chr10:27287069-27287070
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:27243000-27294800 Weak transcription Liver Liver
2 chr10:27251600-27290000 Weak transcription Fetal Intestine Large intestine
3 chr10:27257600-27319000 Weak transcription Stomach Smooth Muscle stomach
4 chr10:27258200-27291200 Weak transcription Left Ventricle heart
5 chr10:27258400-27290000 Weak transcription Fetal Adrenal Gland Adrenal Gland
6 chr10:27269000-27293400 Weak transcription Skeletal Muscle Female skeletal muscle
7 chr10:27270400-27291000 Weak transcription Adipose Nuclei Adipose
8 chr10:27273200-27290000 Weak transcription Primary T cells from cord blood blood
9 chr10:27277000-27291000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr10:27277800-27290200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
11 chr10:27278600-27309200 Weak transcription HSMM muscle
12 chr10:27280600-27295000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr10:27280800-27290800 Weak transcription Ovary ovary
14 chr10:27283000-27291800 Weak transcription Brain Anterior Caudate brain
15 chr10:27283200-27388400 Weak transcription Psoas Muscle Psoas
16 chr10:27284400-27291400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr10:27284400-27292400 Weak transcription NHDF-Ad bronchial
18 chr10:27284400-27310400 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr10:27284800-27308800 Weak transcription ES-WA7 Cell Line embryonic stem cell
20 chr10:27285000-27319200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
21 chr10:27285400-27312000 Weak transcription Brain Hippocampus Middle brain
22 chr10:27285400-27319200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
23 chr10:27286200-27288600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
24 chr10:27286200-27288600 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
25 chr10:27286200-27302600 Weak transcription Fetal Heart heart
26 chr10:27286400-27287200 Enhancers Primary T cells effector/memory enriched fromperipheralblood blood
27 chr10:27286400-27287400 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
28 chr10:27286400-27291000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr10:27286400-27310000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
30 chr10:27286400-27316600 Weak transcription Duodenum Mucosa Duodenum
31 chr10:27286600-27287200 ZNF genes & repeats ES-UCSF4 Cell Line embryonic stem cell
32 chr10:27286600-27288000 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr10:27286600-27291000 Weak transcription Primary hematopoietic stem cells short term culture blood
34 chr10:27286600-27311800 Weak transcription Primary T cells fromperipheralblood blood
35 chr10:27286600-27312000 Weak transcription Fetal Thymus thymus
36 chr10:27286800-27288200 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
37 chr10:27286800-27290200 Weak transcription Primary hematopoietic stem cells blood
38 chr10:27286800-27293800 Weak transcription HepG2 liver
39 chr10:27287000-27290800 Weak transcription Fetal Stomach stomach
40 chr10:27287000-27291000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr10:27287000-27308800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
42 chr10:27287000-27312000 Weak transcription Cortex derived primary cultured neurospheres brain
43 chr10:27287000-27350600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin

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Last update: Aug 31, 2015