Variant report

Variant	rs56116611
Chromosome Location	chr12:9930010-9930011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:9924505..9927030-chr12:9928111..9932157,3	K562	blood:
2	chr12:9928036..9930338-chr12:9937118..9939542,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs3136562	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3176777	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57338882	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59258216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74062759	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7957102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:9918600-9932000	Weak transcription	Primary B cells from peripheral blood	blood
2	chr12:9924400-9930200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr12:9924600-9930600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr12:9924800-9930200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr12:9926200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr12:9926800-9930200	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr12:9927000-9930200	Enhancers	Primary T cells from cord blood	blood
8	chr12:9927200-9930400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:9927600-9934000	Weak transcription	Thymus	Thymus
10	chr12:9927600-9938800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:9927800-9935400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:9928000-9935600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr12:9928400-9945400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr12:9929000-9930200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr12:9929200-9931400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr12:9929800-9935200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr12:9929800-9936000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr12:9930000-9933200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr12:9930000-9933800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr12:9930000-9934200	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr12:9930000-9945400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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