Variant report

Variant	rs561219959
Chromosome Location	chr9:13230266-13230267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:13230183..13232341-chr9:13234177..13235807,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892578	chr9:12942956-13485035	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv892583	chr9:13166139-13350478	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv892584	chr9:13214871-13350478	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv427838	chr9:13229753-13393890	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:13164200-13248600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:13164200-13258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:13189000-13268600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:13190400-13237800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr9:13202800-13250600	Weak transcription	Pancreas	Pancrea
6	chr9:13202800-13250800	Weak transcription	Psoas Muscle	Psoas
7	chr9:13203000-13261000	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:13203400-13247000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr9:13203600-13245600	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:13204000-13241800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:13204000-13249200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr9:13204200-13244600	Weak transcription	HepG2	liver
13	chr9:13206000-13247000	Weak transcription	Brain Angular Gyrus	brain
14	chr9:13208200-13265000	Weak transcription	Aorta	Aorta
15	chr9:13209800-13266000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr9:13215800-13233200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:13216600-13247000	Weak transcription	Fetal Brain Female	brain
18	chr9:13217000-13244200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:13218200-13231800	Weak transcription	NH-A	brain
20	chr9:13219600-13232800	Weak transcription	NHDF-Ad	bronchial
21	chr9:13219800-13265600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:13221600-13241600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:13221600-13244200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr9:13221600-13245400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr9:13221800-13242800	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr9:13221800-13246600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:13222600-13238000	Weak transcription	Adipose Nuclei	Adipose
28	chr9:13222600-13246200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:13223800-13239600	Weak transcription	HSMM	muscle
30	chr9:13224000-13241400	Weak transcription	Ovary	ovary
31	chr9:13224000-13242200	Weak transcription	Fetal Stomach	stomach
32	chr9:13224000-13264600	Weak transcription	Osteobl	bone
33	chr9:13224200-13241800	Weak transcription	Fetal Muscle Leg	muscle
34	chr9:13224200-13245600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr9:13224400-13242600	Weak transcription	Fetal Lung	lung
36	chr9:13224400-13252400	Weak transcription	Liver	Liver
37	chr9:13224600-13231200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr9:13224600-13241800	Weak transcription	Fetal Muscle Trunk	muscle
39	chr9:13224600-13242400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:13224600-13247000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr9:13224800-13236600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:13225200-13236400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr9:13226000-13252800	Weak transcription	Fetal Heart	heart
44	chr9:13226200-13237000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:13226400-13247000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr9:13226600-13237200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr9:13226600-13242600	Weak transcription	Left Ventricle	heart
48	chr9:13226600-13259200	Weak transcription	Right Ventricle	heart
49	chr9:13226800-13278000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr9:13229400-13236400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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