Variant report

Variant	rs56125422
Chromosome Location	chr3:180136750-180136751
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs55677114	0.91[AFR][1000 genomes]
rs59694256	1.00[AFR][1000 genomes]
rs60739499	0.91[AFR][1000 genomes]
rs73883836	1.00[AFR][1000 genomes]
rs73883840	1.00[AFR][1000 genomes]
rs73883842	1.00[AFR][1000 genomes]
rs73883852	0.81[AFR][1000 genomes]
rs73883853	1.00[AFR][1000 genomes]
rs73883855	1.00[AFR][1000 genomes]
rs73883856	1.00[AFR][1000 genomes]
rs73883858	1.00[AFR][1000 genomes]
rs73883859	1.00[AFR][1000 genomes]
rs73883860	1.00[AFR][1000 genomes]
rs73883861	1.00[AFR][1000 genomes]
rs73883863	1.00[AFR][1000 genomes]
rs73883864	1.00[AFR][1000 genomes]
rs73883865	1.00[AFR][1000 genomes]
rs73883866	0.91[AFR][1000 genomes]
rs73883867	0.91[AFR][1000 genomes]
rs73883870	0.91[AFR][1000 genomes]
rs73883871	0.91[AFR][1000 genomes]
rs73883874	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv997388	chr3:179899279-180172349	Enhancers Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv536817	chr3:179899279-180172349	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180134000-180138000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr3:180134400-180137800	Weak transcription	Osteobl	bone
3	chr3:180134600-180138200	Weak transcription	NHEK	skin
4	chr3:180134800-180137400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr3:180134800-180139000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:180135000-180138400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:180135600-180138000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:180135800-180138800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:180136000-180138000	Weak transcription	HMEC	breast
10	chr3:180136400-180137600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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