Variant report

Variant	rs60739499
Chromosome Location	chr3:180194979-180194980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1062	0.81[AFR][1000 genomes]
rs55677114	1.00[AFR][1000 genomes]
rs55978065	0.81[AFR][1000 genomes]
rs56125422	0.91[AFR][1000 genomes]
rs58569916	0.81[AFR][1000 genomes]
rs58702111	0.81[AFR][1000 genomes]
rs59098940	0.81[AFR][1000 genomes]
rs59694256	0.91[AFR][1000 genomes]
rs61152417	0.81[AFR][1000 genomes]
rs61665243	0.81[AFR][1000 genomes]
rs61680334	0.81[AFR][1000 genomes]
rs73883836	0.91[AFR][1000 genomes]
rs73883840	0.91[AFR][1000 genomes]
rs73883842	0.91[AFR][1000 genomes]
rs73883853	0.91[AFR][1000 genomes]
rs73883855	0.91[AFR][1000 genomes]
rs73883856	0.91[AFR][1000 genomes]
rs73883858	0.91[AFR][1000 genomes]
rs73883859	0.91[AFR][1000 genomes]
rs73883860	0.91[AFR][1000 genomes]
rs73883861	0.91[AFR][1000 genomes]
rs73883863	0.91[AFR][1000 genomes]
rs73883864	0.91[AFR][1000 genomes]
rs73883865	0.91[AFR][1000 genomes]
rs73883866	1.00[AFR][1000 genomes]
rs73883867	1.00[AFR][1000 genomes]
rs73883870	1.00[AFR][1000 genomes]
rs73883871	1.00[AFR][1000 genomes]
rs73883874	1.00[AFR][1000 genomes]
rs73883876	0.81[AFR][1000 genomes]
rs73883877	0.81[AFR][1000 genomes]
rs73883880	0.81[AFR][1000 genomes]
rs73883883	0.81[AFR][1000 genomes]
rs73883884	0.81[AFR][1000 genomes]
rs73883889	0.81[AFR][1000 genomes]
rs73883890	0.81[AFR][1000 genomes]
rs73883892	0.81[AFR][1000 genomes]
rs73883894	0.81[AFR][1000 genomes]
rs73883895	0.81[AFR][1000 genomes]
rs73883896	0.81[AFR][1000 genomes]
rs73883897	0.81[AFR][1000 genomes]
rs73883898	0.81[AFR][1000 genomes]
rs73883899	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180187400-180205600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr3:180187600-180198800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:180194800-180198600	Weak transcription	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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