Variant report

Variant	rs59098940
Chromosome Location	chr3:180234170-180234171
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1062	1.00[AFR][1000 genomes]
rs55677114	0.81[AFR][1000 genomes]
rs55978065	1.00[AFR][1000 genomes]
rs58569916	1.00[AFR][1000 genomes]
rs58702111	1.00[AFR][1000 genomes]
rs60739499	0.81[AFR][1000 genomes]
rs61152417	1.00[AFR][1000 genomes]
rs61665243	1.00[AFR][1000 genomes]
rs61680334	1.00[AFR][1000 genomes]
rs73883866	0.81[AFR][1000 genomes]
rs73883867	0.81[AFR][1000 genomes]
rs73883870	0.81[AFR][1000 genomes]
rs73883871	0.81[AFR][1000 genomes]
rs73883874	0.81[AFR][1000 genomes]
rs73883876	1.00[AFR][1000 genomes]
rs73883877	1.00[AFR][1000 genomes]
rs73883880	1.00[AFR][1000 genomes]
rs73883883	1.00[AFR][1000 genomes]
rs73883884	1.00[AFR][1000 genomes]
rs73883889	1.00[AFR][1000 genomes]
rs73883890	1.00[AFR][1000 genomes]
rs73883892	1.00[AFR][1000 genomes]
rs73883894	1.00[AFR][1000 genomes]
rs73883895	1.00[AFR][1000 genomes]
rs73883896	1.00[AFR][1000 genomes]
rs73883897	1.00[AFR][1000 genomes]
rs73883898	1.00[AFR][1000 genomes]
rs73883899	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012271	chr3:179806875-180234871	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180221000-180235400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:180229200-180234600	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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