Variant report
| Variant | rs58702111 |
|---|---|
| Chromosome Location | chr3:180289186-180289187 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:180288597..180290197-chr3:180293496..180295208,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1062 | 1.00[AFR][1000 genomes] |
| rs55677114 | 0.81[AFR][1000 genomes] |
| rs55978065 | 1.00[AFR][1000 genomes] |
| rs58569916 | 1.00[AFR][1000 genomes] |
| rs59098940 | 1.00[AFR][1000 genomes] |
| rs60739499 | 0.81[AFR][1000 genomes] |
| rs61152417 | 1.00[AFR][1000 genomes] |
| rs61665243 | 1.00[AFR][1000 genomes] |
| rs61680334 | 1.00[AFR][1000 genomes] |
| rs73883866 | 0.81[AFR][1000 genomes] |
| rs73883867 | 0.81[AFR][1000 genomes] |
| rs73883870 | 0.81[AFR][1000 genomes] |
| rs73883871 | 0.81[AFR][1000 genomes] |
| rs73883874 | 0.81[AFR][1000 genomes] |
| rs73883876 | 1.00[AFR][1000 genomes] |
| rs73883877 | 1.00[AFR][1000 genomes] |
| rs73883880 | 1.00[AFR][1000 genomes] |
| rs73883883 | 1.00[AFR][1000 genomes] |
| rs73883884 | 1.00[AFR][1000 genomes] |
| rs73883889 | 1.00[AFR][1000 genomes] |
| rs73883890 | 1.00[AFR][1000 genomes] |
| rs73883892 | 1.00[AFR][1000 genomes] |
| rs73883894 | 1.00[AFR][1000 genomes] |
| rs73883895 | 1.00[AFR][1000 genomes] |
| rs73883896 | 1.00[AFR][1000 genomes] |
| rs73883897 | 1.00[AFR][1000 genomes] |
| rs73883898 | 1.00[AFR][1000 genomes] |
| rs73883899 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1007831 | chr3:180162003-180348203 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv536818 | chr3:180162003-180348203 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:180285600-180293200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 2 | chr3:180288800-180289600 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
