Variant report
Variant | rs61152417 |
---|---|
Chromosome Location | chr3:180299710-180299711 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1062 | 1.00[AFR][1000 genomes] |
rs55677114 | 0.81[AFR][1000 genomes] |
rs55978065 | 1.00[AFR][1000 genomes] |
rs58569916 | 1.00[AFR][1000 genomes] |
rs58702111 | 1.00[AFR][1000 genomes] |
rs59098940 | 1.00[AFR][1000 genomes] |
rs60739499 | 0.81[AFR][1000 genomes] |
rs61665243 | 1.00[AFR][1000 genomes] |
rs61680334 | 1.00[AFR][1000 genomes] |
rs73883866 | 0.81[AFR][1000 genomes] |
rs73883867 | 0.81[AFR][1000 genomes] |
rs73883870 | 0.81[AFR][1000 genomes] |
rs73883871 | 0.81[AFR][1000 genomes] |
rs73883874 | 0.81[AFR][1000 genomes] |
rs73883876 | 1.00[AFR][1000 genomes] |
rs73883877 | 1.00[AFR][1000 genomes] |
rs73883880 | 1.00[AFR][1000 genomes] |
rs73883883 | 1.00[AFR][1000 genomes] |
rs73883884 | 1.00[AFR][1000 genomes] |
rs73883889 | 1.00[AFR][1000 genomes] |
rs73883890 | 1.00[AFR][1000 genomes] |
rs73883892 | 1.00[AFR][1000 genomes] |
rs73883894 | 1.00[AFR][1000 genomes] |
rs73883895 | 1.00[AFR][1000 genomes] |
rs73883896 | 1.00[AFR][1000 genomes] |
rs73883897 | 1.00[AFR][1000 genomes] |
rs73883898 | 1.00[AFR][1000 genomes] |
rs73883899 | 1.00[AFR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1007831 | chr3:180162003-180348203 | Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv536818 | chr3:180162003-180348203 | Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
3 | esv3359190 | chr3:180298396-180397223 | Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:180297200-180312200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr3:180298000-180309800 | Weak transcription | Brain Anterior Caudate | brain |