Variant report

Variant	rs73883876
Chromosome Location	chr3:180249292-180249293
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1062	1.00[AFR][1000 genomes]
rs55677114	0.81[AFR][1000 genomes]
rs55978065	1.00[AFR][1000 genomes]
rs58569916	1.00[AFR][1000 genomes]
rs58702111	1.00[AFR][1000 genomes]
rs59098940	1.00[AFR][1000 genomes]
rs60739499	0.81[AFR][1000 genomes]
rs61152417	1.00[AFR][1000 genomes]
rs61665243	1.00[AFR][1000 genomes]
rs61680334	1.00[AFR][1000 genomes]
rs73883866	0.81[AFR][1000 genomes]
rs73883867	0.81[AFR][1000 genomes]
rs73883870	0.81[AFR][1000 genomes]
rs73883871	0.81[AFR][1000 genomes]
rs73883874	0.81[AFR][1000 genomes]
rs73883877	1.00[AFR][1000 genomes]
rs73883880	1.00[AFR][1000 genomes]
rs73883883	1.00[AFR][1000 genomes]
rs73883884	1.00[AFR][1000 genomes]
rs73883889	1.00[AFR][1000 genomes]
rs73883890	1.00[AFR][1000 genomes]
rs73883892	1.00[AFR][1000 genomes]
rs73883894	1.00[AFR][1000 genomes]
rs73883895	1.00[AFR][1000 genomes]
rs73883896	1.00[AFR][1000 genomes]
rs73883897	1.00[AFR][1000 genomes]
rs73883898	1.00[AFR][1000 genomes]
rs73883899	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007831	chr3:180162003-180348203	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536818	chr3:180162003-180348203	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:180247600-180249600	Weak transcription	Ovary	ovary
2	chr3:180249200-180249400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links