Variant report

Variant	rs56127554
Chromosome Location	chr11:26291012-26291013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12223851	0.92[AFR][1000 genomes]
rs56215315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56369296	1.00[AMR][1000 genomes]
rs56659673	1.00[AMR][1000 genomes]
rs58152915	1.00[AMR][1000 genomes]
rs59132731	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26286000-26306200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:26289400-26291800	Weak transcription	Fetal Lung	lung
3	chr11:26290800-26291200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr11:26290800-26291400	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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