Variant report

Variant	rs12223851
Chromosome Location	chr11:26291954-26291955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:26290458..26292848-chr11:26296618..26298814,2	K562	blood:

Extended variants
information (count: 128 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10501044	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10501046	0.81[ASN][1000 genomes]
rs1072987	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767517	0.83[ASN][1000 genomes]
rs10834934	0.92[ASN][1000 genomes]
rs10834935	0.92[ASN][1000 genomes]
rs10834936	0.92[ASN][1000 genomes]
rs10834937	0.88[ASN][1000 genomes]
rs10834938	0.92[ASN][1000 genomes]
rs10834939	0.92[ASN][1000 genomes]
rs10834940	0.92[ASN][1000 genomes]
rs10834941	0.92[ASN][1000 genomes]
rs10834942	0.92[ASN][1000 genomes]
rs10834943	0.92[ASN][1000 genomes]
rs10834946	0.92[ASN][1000 genomes]
rs10834947	0.90[ASN][1000 genomes]
rs10834948	0.90[ASN][1000 genomes]
rs10834949	0.92[ASN][1000 genomes]
rs10834950	0.92[ASN][1000 genomes]
rs10834951	0.92[ASN][1000 genomes]
rs10834952	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10834961	0.88[ASN][1000 genomes]
rs10834962	0.81[ASN][1000 genomes]
rs11029427	0.84[EUR][1000 genomes]
rs11029430	0.84[EUR][1000 genomes]
rs11029432	0.84[EUR][1000 genomes]
rs11029433	0.84[EUR][1000 genomes]
rs11029435	0.84[EUR][1000 genomes]
rs11029436	0.84[EUR][1000 genomes]
rs11029437	0.84[EUR][1000 genomes]
rs11029438	0.84[EUR][1000 genomes]
rs11029439	0.84[EUR][1000 genomes]
rs11029442	0.84[EUR][1000 genomes]
rs11029443	0.84[EUR][1000 genomes]
rs11029444	0.84[EUR][1000 genomes]
rs11029445	0.84[EUR][1000 genomes]
rs11029447	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029448	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029449	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029450	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029451	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029452	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029453	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029454	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029455	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029456	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029460	0.92[ASN][1000 genomes]
rs11029463	0.92[ASN][1000 genomes]
rs11029464	0.92[ASN][1000 genomes]
rs11029465	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029467	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029468	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029469	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029470	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029472	0.83[ASN][1000 genomes]
rs11029473	0.82[ASN][1000 genomes]
rs11029474	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029475	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029476	0.90[ASN][1000 genomes]
rs11029477	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029478	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029479	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029483	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap]
rs11029484	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11029501	0.88[ASN][1000 genomes]
rs11029502	0.88[ASN][1000 genomes]
rs11029508	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029510	0.88[ASN][1000 genomes]
rs11029514	0.81[ASN][1000 genomes]
rs11029515	0.81[ASN][1000 genomes]
rs11029516	0.81[ASN][1000 genomes]
rs11029517	0.81[ASN][1000 genomes]
rs11029518	0.81[ASN][1000 genomes]
rs11029519	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[ASN][1000 genomes]
rs11029522	0.85[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs11822673	1.00[ASN][1000 genomes]
rs11824243	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11824306	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11825099	1.00[ASN][1000 genomes]
rs12049824	0.81[ASN][1000 genomes]
rs12221994	0.81[ASN][1000 genomes]
rs12222020	0.84[EUR][1000 genomes]
rs12222176	0.84[EUR][1000 genomes]
rs12222558	0.84[EUR][1000 genomes]
rs12222745	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223352	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12223726	0.81[ASN][1000 genomes]
rs12224038	0.81[ASN][1000 genomes]
rs12224075	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12225290	0.84[EUR][1000 genomes]
rs12225305	0.84[EUR][1000 genomes]
rs12225764	0.84[EUR][1000 genomes]
rs12226827	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226840	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226854	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12271561	0.90[ASN][1000 genomes]
rs12275831	0.92[ASN][1000 genomes]
rs12278192	1.00[ASN][1000 genomes]
rs1461393	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1493729	1.00[MEX][hapmap]
rs16915466	0.81[ASN][1000 genomes]
rs1841572	0.96[ASN][1000 genomes]
rs1960495	0.81[ASN][1000 genomes]
rs34019155	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34362229	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35215165	0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35624765	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4420218	0.92[ASN][1000 genomes]
rs55993533	0.92[ASN][1000 genomes]
rs56127554	0.92[AFR][1000 genomes]
rs56215315	0.92[AFR][1000 genomes]
rs59132731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59898647	0.84[EUR][1000 genomes]
rs60193609	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60646514	0.81[ASN][1000 genomes]
rs60724653	0.84[EUR][1000 genomes]
rs60811682	0.81[ASN][1000 genomes]
rs60835780	0.84[EUR][1000 genomes]
rs6484200	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7105867	0.85[ASN][1000 genomes]
rs7930530	0.92[ASN][1000 genomes]
rs7938680	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7942458	0.92[ASN][1000 genomes]
rs7945497	0.92[ASN][1000 genomes]
rs7949962	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7950245	1.00[MEX][hapmap]
rs898735	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26286000-26306200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:26291200-26292800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:26291800-26292400	Enhancers	Fetal Lung	lung

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