Variant report

Variant	rs12224038
Chromosome Location	chr11:26341084-26341085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 111 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:110)

rs_ID	r²[population]
rs10501044	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10501046	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10501047	0.92[AFR][1000 genomes]
rs1072987	0.84[ASN][1000 genomes]
rs10767517	0.81[ASN][1000 genomes]
rs10834934	0.88[ASN][1000 genomes]
rs10834935	0.88[ASN][1000 genomes]
rs10834936	0.88[ASN][1000 genomes]
rs10834937	0.84[ASN][1000 genomes]
rs10834938	0.88[ASN][1000 genomes]
rs10834939	0.88[ASN][1000 genomes]
rs10834940	0.88[ASN][1000 genomes]
rs10834941	0.88[ASN][1000 genomes]
rs10834942	0.88[ASN][1000 genomes]
rs10834943	0.88[ASN][1000 genomes]
rs10834946	0.88[ASN][1000 genomes]
rs10834947	0.86[ASN][1000 genomes]
rs10834948	0.86[ASN][1000 genomes]
rs10834949	0.88[ASN][1000 genomes]
rs10834950	0.88[ASN][1000 genomes]
rs10834951	0.88[ASN][1000 genomes]
rs10834952	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10834961	0.92[ASN][1000 genomes]
rs10834962	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029370	0.85[CHB][hapmap]
rs11029371	0.85[CHB][hapmap]
rs11029449	0.81[ASN][1000 genomes]
rs11029450	0.81[ASN][1000 genomes]
rs11029451	0.81[ASN][1000 genomes]
rs11029452	0.83[ASN][1000 genomes]
rs11029453	0.84[ASN][1000 genomes]
rs11029454	0.84[ASN][1000 genomes]
rs11029455	0.84[ASN][1000 genomes]
rs11029456	0.84[ASN][1000 genomes]
rs11029460	0.88[ASN][1000 genomes]
rs11029463	0.88[ASN][1000 genomes]
rs11029464	0.88[ASN][1000 genomes]
rs11029465	0.88[ASN][1000 genomes]
rs11029467	0.88[ASN][1000 genomes]
rs11029468	0.88[ASN][1000 genomes]
rs11029469	0.85[ASN][1000 genomes]
rs11029470	0.88[ASN][1000 genomes]
rs11029472	0.81[ASN][1000 genomes]
rs11029474	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029475	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029476	0.86[ASN][1000 genomes]
rs11029477	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029478	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029479	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029483	1.00[CHB][hapmap]
rs11029484	1.00[CHB][hapmap]
rs11029501	0.92[ASN][1000 genomes]
rs11029502	0.92[ASN][1000 genomes]
rs11029508	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029510	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029514	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029516	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029517	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029518	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029519	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029522	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11029526	0.94[ASN][1000 genomes]
rs11029531	1.00[CEU][hapmap]
rs11822673	0.81[ASN][1000 genomes]
rs11824243	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11824306	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11824431	0.82[AFR][1000 genomes]
rs11825099	0.81[ASN][1000 genomes]
rs11826153	0.83[YRI][hapmap];0.92[AFR][1000 genomes]
rs11826224	0.92[AFR][1000 genomes]
rs11826876	0.82[AFR][1000 genomes]
rs11827865	0.83[YRI][hapmap];0.92[AFR][1000 genomes]
rs12049824	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12221994	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12222745	0.84[ASN][1000 genomes]
rs12223352	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12223726	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223851	0.81[ASN][1000 genomes]
rs12224075	0.84[ASN][1000 genomes]
rs12226827	0.84[ASN][1000 genomes]
rs12226840	0.84[ASN][1000 genomes]
rs12226854	0.84[ASN][1000 genomes]
rs12271561	0.86[ASN][1000 genomes]
rs12275831	0.88[ASN][1000 genomes]
rs12278192	0.81[ASN][1000 genomes]
rs1461393	0.88[ASN][1000 genomes]
rs16915466	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1841572	0.84[ASN][1000 genomes]
rs1960495	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34019155	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34362229	0.85[ASN][1000 genomes]
rs35215165	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35624765	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4420218	0.88[ASN][1000 genomes]
rs55993533	0.88[ASN][1000 genomes]
rs59132731	0.81[ASN][1000 genomes]
rs60193609	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60646514	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60811682	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6484200	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7129294	1.00[CEU][hapmap]
rs7930530	0.88[ASN][1000 genomes]
rs7938680	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7941215	1.00[CEU][hapmap]
rs7942458	0.88[ASN][1000 genomes]
rs7945497	0.88[ASN][1000 genomes]
rs7949962	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7950347	1.00[CEU][hapmap]
rs898735	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26338600-26341600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:26338800-26341600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr11:26338800-26341600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:26341000-26342000	Enhancers	Hela-S3	cervix

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