Variant report

Variant	rs11826224
Chromosome Location	chr11:26349905-26349906
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10501044	0.86[AFR][1000 genomes]
rs10501046	0.92[AFR][1000 genomes]
rs10501047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10834962	1.00[AFR][1000 genomes]
rs11029515	0.92[AFR][1000 genomes]
rs11820185	0.81[AFR][1000 genomes]
rs11824431	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11826876	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11827865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12049824	1.00[AFR][1000 genomes]
rs12221994	1.00[AFR][1000 genomes]
rs12223352	0.86[AFR][1000 genomes]
rs12223726	1.00[AFR][1000 genomes]
rs12224038	0.92[AFR][1000 genomes]
rs16915436	0.82[AFR][1000 genomes]
rs16915437	0.81[AFR][1000 genomes]
rs16915466	1.00[AFR][1000 genomes]
rs1960495	1.00[AFR][1000 genomes]
rs60811682	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422406	chr11:26329870-26473641	Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26341800-26353200	Weak transcription	Pancreas	Pancrea
2	chr11:26349600-26350200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:26349600-26350800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr11:26349800-26350000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:26349800-26350400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr11:26349800-26351800	Enhancers	Fetal Brain Male	brain
7	chr11:26349800-26353200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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