Variant report
| Variant | rs11826876 |
|---|---|
| Chromosome Location | chr11:26331237-26331238 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10501044 | 0.93[AFR][1000 genomes] |
| rs10501046 | 0.82[AFR][1000 genomes] |
| rs10501047 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10834952 | 0.81[AFR][1000 genomes] |
| rs10834962 | 0.89[AFR][1000 genomes] |
| rs11029465 | 0.89[AFR][1000 genomes] |
| rs11029467 | 0.89[AFR][1000 genomes] |
| rs11029468 | 0.89[AFR][1000 genomes] |
| rs11029469 | 0.89[AFR][1000 genomes] |
| rs11029470 | 0.86[AFR][1000 genomes] |
| rs11029474 | 0.89[AFR][1000 genomes] |
| rs11029475 | 0.89[AFR][1000 genomes] |
| rs11029515 | 0.82[AFR][1000 genomes] |
| rs11820185 | 0.88[AFR][1000 genomes] |
| rs11824243 | 0.89[AFR][1000 genomes] |
| rs11824306 | 0.87[AFR][1000 genomes] |
| rs11824431 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11826153 | 0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11826224 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11827865 | 0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12049824 | 0.89[AFR][1000 genomes] |
| rs12221994 | 0.89[AFR][1000 genomes] |
| rs12223352 | 0.93[AFR][1000 genomes] |
| rs12223726 | 0.89[AFR][1000 genomes] |
| rs12224038 | 0.82[AFR][1000 genomes] |
| rs16915436 | 0.89[AFR][1000 genomes] |
| rs16915437 | 0.88[AFR][1000 genomes] |
| rs16915466 | 0.89[AFR][1000 genomes] |
| rs1960495 | 0.89[AFR][1000 genomes] |
| rs34019155 | 0.87[AFR][1000 genomes] |
| rs34362229 | 0.89[AFR][1000 genomes] |
| rs34411356 | 0.87[AFR][1000 genomes] |
| rs35215165 | 0.89[AFR][1000 genomes] |
| rs35624765 | 0.87[AFR][1000 genomes] |
| rs60193609 | 0.89[AFR][1000 genomes] |
| rs60811682 | 0.89[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422406 | chr11:26329870-26473641 | Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:26328400-26337600 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
