Variant report

Variant	rs11029475
Chromosome Location	chr11:26307573-26307574
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC15-1	chr11:26307258-26307703	ENSG00000254819

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:112)

rs_ID	r²[population]
rs10501044	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501046	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1072987	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767517	0.92[ASN][1000 genomes]
rs10834934	1.00[ASN][1000 genomes]
rs10834935	1.00[ASN][1000 genomes]
rs10834936	1.00[ASN][1000 genomes]
rs10834937	0.96[ASN][1000 genomes]
rs10834938	1.00[ASN][1000 genomes]
rs10834939	1.00[ASN][1000 genomes]
rs10834940	1.00[ASN][1000 genomes]
rs10834941	1.00[ASN][1000 genomes]
rs10834942	1.00[ASN][1000 genomes]
rs10834943	1.00[ASN][1000 genomes]
rs10834945	0.85[ASN][1000 genomes]
rs10834946	1.00[ASN][1000 genomes]
rs10834947	0.98[ASN][1000 genomes]
rs10834948	0.98[ASN][1000 genomes]
rs10834949	1.00[ASN][1000 genomes]
rs10834950	1.00[ASN][1000 genomes]
rs10834951	1.00[ASN][1000 genomes]
rs10834952	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10834961	0.96[ASN][1000 genomes]
rs10834962	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029447	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029448	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029449	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029450	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029451	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029452	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029453	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029454	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029455	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029456	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029460	1.00[ASN][1000 genomes]
rs11029463	1.00[ASN][1000 genomes]
rs11029464	1.00[ASN][1000 genomes]
rs11029465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029472	0.92[ASN][1000 genomes]
rs11029473	0.90[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11029474	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029476	0.98[ASN][1000 genomes]
rs11029477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029478	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029479	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029501	0.96[ASN][1000 genomes]
rs11029502	0.96[ASN][1000 genomes]
rs11029508	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029510	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029514	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029515	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029516	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029517	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029518	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029519	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029522	0.88[ASN][1000 genomes]
rs11029526	0.82[ASN][1000 genomes]
rs11820185	0.91[AFR][1000 genomes]
rs11822673	0.92[ASN][1000 genomes]
rs11824243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824253	0.86[AFR][1000 genomes]
rs11824306	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824431	0.89[AFR][1000 genomes]
rs11825099	0.92[ASN][1000 genomes]
rs11826876	0.89[AFR][1000 genomes]
rs12049824	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221994	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12222745	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223352	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223726	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12223851	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12224038	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12224075	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226827	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226840	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226854	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12271557	0.83[ASN][1000 genomes]
rs12271561	0.98[ASN][1000 genomes]
rs12275831	1.00[ASN][1000 genomes]
rs12278192	0.92[ASN][1000 genomes]
rs12284961	0.83[ASN][1000 genomes]
rs12291807	0.83[ASN][1000 genomes]
rs1461393	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915436	0.90[AFR][1000 genomes]
rs16915437	0.88[AFR][1000 genomes]
rs16915466	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1841572	0.96[ASN][1000 genomes]
rs1960495	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34019155	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34362229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34411356	0.97[AFR][1000 genomes]
rs35215165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35624765	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4420218	1.00[ASN][1000 genomes]
rs55993533	1.00[ASN][1000 genomes]
rs59132731	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60193609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646514	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60811682	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6484200	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105867	0.85[ASN][1000 genomes]
rs7930530	1.00[ASN][1000 genomes]
rs7938680	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942458	1.00[ASN][1000 genomes]
rs7945497	1.00[ASN][1000 genomes]
rs7949962	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898735	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs999651	0.83[AFR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26306600-26308200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr11:26306600-26308200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26306600-26308200	Weak transcription	NH-A	brain
4	chr11:26306600-26308600	Weak transcription	NHLF	lung
5	chr11:26306600-26309200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr11:26306600-26309800	Weak transcription	Fetal Kidney	kidney
7	chr11:26306800-26308000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:26306800-26308800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:26307000-26307600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:26307000-26307600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:26307000-26307800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:26307000-26308000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:26307000-26308600	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr11:26307200-26307600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr11:26307200-26307800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:26307200-26308800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:26307200-26308800	Enhancers	NHDF-Ad	bronchial
18	chr11:26307400-26307600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr11:26307400-26307600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:26307400-26307600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr11:26307400-26307600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr11:26307400-26307600	Enhancers	Psoas Muscle	Psoas
23	chr11:26307400-26308400	Enhancers	Fetal Heart	heart

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