Variant report
| Variant | rs11820185 |
|---|---|
| Chromosome Location | chr11:26314310-26314311 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:3)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:3 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr11:26314271-26314450 | Hela-S3 | cervix: | n/a | chr11:26314299-26314310 |
| 2 | CEBPB | chr11:26314230-26314461 | A549 | lung: | n/a | chr11:26314299-26314310 |
| 3 | CEBPB | chr11:26314130-26314475 | HepG2 | liver: | n/a | chr11:26314299-26314310 |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254819 | TF binding region |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10501044 | 0.92[AFR][1000 genomes] |
| rs10501047 | 0.81[AFR][1000 genomes] |
| rs10834952 | 0.80[AFR][1000 genomes] |
| rs10834962 | 0.81[AFR][1000 genomes] |
| rs11029465 | 0.91[AFR][1000 genomes] |
| rs11029467 | 0.91[AFR][1000 genomes] |
| rs11029468 | 0.91[AFR][1000 genomes] |
| rs11029469 | 0.91[AFR][1000 genomes] |
| rs11029470 | 0.87[AFR][1000 genomes] |
| rs11029473 | 0.81[AFR][1000 genomes] |
| rs11029474 | 0.91[AFR][1000 genomes] |
| rs11029475 | 0.91[AFR][1000 genomes] |
| rs11824243 | 0.91[AFR][1000 genomes] |
| rs11824306 | 0.88[AFR][1000 genomes] |
| rs11824431 | 0.88[AFR][1000 genomes] |
| rs11826153 | 0.81[AFR][1000 genomes] |
| rs11826224 | 0.81[AFR][1000 genomes] |
| rs11826876 | 0.88[AFR][1000 genomes] |
| rs11827865 | 0.81[AFR][1000 genomes] |
| rs12049824 | 0.81[AFR][1000 genomes] |
| rs12221994 | 0.81[AFR][1000 genomes] |
| rs12223352 | 0.92[AFR][1000 genomes] |
| rs12223726 | 0.81[AFR][1000 genomes] |
| rs16915436 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16915437 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16915466 | 0.81[AFR][1000 genomes] |
| rs1960495 | 0.81[AFR][1000 genomes] |
| rs34019155 | 0.88[AFR][1000 genomes] |
| rs34362229 | 0.91[AFR][1000 genomes] |
| rs34411356 | 0.88[AFR][1000 genomes] |
| rs35215165 | 0.91[AFR][1000 genomes] |
| rs35624765 | 0.88[AFR][1000 genomes] |
| rs60193609 | 0.91[AFR][1000 genomes] |
| rs60811682 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3425701 | chr11:26310425-26330495 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3337671 | chr11:26314226-26316324 | Inactive region | TF binding region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
