Variant report

Variant	rs11029478
Chromosome Location	chr11:26308915-26308916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MUC15-1	chr11:26308875-26309096	ENSG00000254819

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10501044	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10501046	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1072987	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10767517	0.92[ASN][1000 genomes]
rs10834934	1.00[ASN][1000 genomes]
rs10834935	1.00[ASN][1000 genomes]
rs10834936	1.00[ASN][1000 genomes]
rs10834937	0.96[ASN][1000 genomes]
rs10834938	1.00[ASN][1000 genomes]
rs10834939	1.00[ASN][1000 genomes]
rs10834940	1.00[ASN][1000 genomes]
rs10834941	1.00[ASN][1000 genomes]
rs10834942	1.00[ASN][1000 genomes]
rs10834943	1.00[ASN][1000 genomes]
rs10834945	0.85[ASN][1000 genomes]
rs10834946	1.00[ASN][1000 genomes]
rs10834947	0.98[ASN][1000 genomes]
rs10834948	0.98[ASN][1000 genomes]
rs10834949	1.00[ASN][1000 genomes]
rs10834950	1.00[ASN][1000 genomes]
rs10834951	1.00[ASN][1000 genomes]
rs10834952	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10834961	0.96[ASN][1000 genomes]
rs10834962	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029447	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029448	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029449	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029450	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029451	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029452	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11029453	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029454	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029455	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029456	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029460	1.00[ASN][1000 genomes]
rs11029463	1.00[ASN][1000 genomes]
rs11029464	1.00[ASN][1000 genomes]
rs11029465	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029467	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029468	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029469	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029470	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029472	0.92[ASN][1000 genomes]
rs11029473	0.90[ASN][1000 genomes]
rs11029474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029475	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029476	0.98[ASN][1000 genomes]
rs11029477	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029501	0.96[ASN][1000 genomes]
rs11029502	0.96[ASN][1000 genomes]
rs11029508	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029510	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11029514	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029515	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029516	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029517	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029518	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029519	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029522	0.88[ASN][1000 genomes]
rs11029526	0.82[ASN][1000 genomes]
rs11822673	0.92[ASN][1000 genomes]
rs11824243	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824306	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11825099	0.92[ASN][1000 genomes]
rs12049824	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12221994	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12222745	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223352	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12223726	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12223851	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12224038	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12224075	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226827	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226840	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12226854	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12271557	0.83[ASN][1000 genomes]
rs12271561	0.98[ASN][1000 genomes]
rs12275831	1.00[ASN][1000 genomes]
rs12278192	0.92[ASN][1000 genomes]
rs12284961	0.83[ASN][1000 genomes]
rs12291807	0.83[ASN][1000 genomes]
rs1461393	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16915466	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1841572	0.96[ASN][1000 genomes]
rs1960495	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34019155	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34362229	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35215165	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35624765	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4420218	1.00[ASN][1000 genomes]
rs55993533	1.00[ASN][1000 genomes]
rs59132731	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60193609	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60646514	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60811682	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6484200	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7105867	0.85[ASN][1000 genomes]
rs7930530	1.00[ASN][1000 genomes]
rs7938680	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7942458	1.00[ASN][1000 genomes]
rs7945497	1.00[ASN][1000 genomes]
rs7949962	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs898735	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26306600-26309200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26306600-26309800	Weak transcription	Fetal Kidney	kidney
3	chr11:26308200-26309200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr11:26308600-26309000	Enhancers	NH-A	brain
5	chr11:26308600-26309000	Enhancers	NHLF	lung

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