Variant report

Variant	rs12278192
Chromosome Location	chr11:26293695-26293696
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 104 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10501044	0.88[ASN][1000 genomes]
rs10501046	0.81[ASN][1000 genomes]
rs1072987	0.96[ASN][1000 genomes]
rs10767517	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs10834934	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834935	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834936	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834937	0.88[ASN][1000 genomes]
rs10834938	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834939	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834940	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834941	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834942	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834943	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834945	0.82[EUR][1000 genomes]
rs10834946	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834947	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10834948	0.90[ASN][1000 genomes]
rs10834949	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834950	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834951	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10834952	0.90[ASN][1000 genomes]
rs10834961	0.88[ASN][1000 genomes]
rs10834962	0.81[ASN][1000 genomes]
rs11029370	0.85[CHB][hapmap]
rs11029371	0.85[CHB][hapmap]
rs11029447	0.83[ASN][1000 genomes]
rs11029448	0.83[ASN][1000 genomes]
rs11029449	0.92[ASN][1000 genomes]
rs11029450	0.92[ASN][1000 genomes]
rs11029451	0.92[ASN][1000 genomes]
rs11029452	0.94[ASN][1000 genomes]
rs11029453	0.96[ASN][1000 genomes]
rs11029454	0.96[ASN][1000 genomes]
rs11029455	0.96[ASN][1000 genomes]
rs11029456	0.96[ASN][1000 genomes]
rs11029460	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029463	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029464	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11029465	0.92[ASN][1000 genomes]
rs11029467	0.92[ASN][1000 genomes]
rs11029468	0.92[ASN][1000 genomes]
rs11029469	0.88[ASN][1000 genomes]
rs11029470	0.92[ASN][1000 genomes]
rs11029472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11029473	0.82[ASN][1000 genomes]
rs11029474	0.92[ASN][1000 genomes]
rs11029475	0.92[ASN][1000 genomes]
rs11029476	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11029477	0.92[ASN][1000 genomes]
rs11029478	0.92[ASN][1000 genomes]
rs11029479	0.92[ASN][1000 genomes]
rs11029483	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap]
rs11029484	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap]
rs11029501	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029502	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11029508	0.88[ASN][1000 genomes]
rs11029510	0.88[ASN][1000 genomes]
rs11029514	0.81[ASN][1000 genomes]
rs11029515	0.81[ASN][1000 genomes]
rs11029516	0.81[ASN][1000 genomes]
rs11029517	0.81[ASN][1000 genomes]
rs11029518	0.81[ASN][1000 genomes]
rs11029519	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs11029522	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[ASN][1000 genomes]
rs11822673	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11824243	0.92[ASN][1000 genomes]
rs11824306	0.92[ASN][1000 genomes]
rs11825099	1.00[ASN][1000 genomes]
rs12049824	0.81[ASN][1000 genomes]
rs12221994	0.81[ASN][1000 genomes]
rs12222745	0.96[ASN][1000 genomes]
rs12223352	0.88[ASN][1000 genomes]
rs12223726	0.81[ASN][1000 genomes]
rs12223851	1.00[ASN][1000 genomes]
rs12224038	0.81[ASN][1000 genomes]
rs12224075	0.96[ASN][1000 genomes]
rs12226827	0.96[ASN][1000 genomes]
rs12226840	0.96[ASN][1000 genomes]
rs12226854	0.96[ASN][1000 genomes]
rs12271561	0.90[ASN][1000 genomes]
rs12275831	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1461393	0.92[ASN][1000 genomes]
rs16915466	0.81[ASN][1000 genomes]
rs1841572	0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1960495	0.81[ASN][1000 genomes]
rs34019155	0.88[ASN][1000 genomes]
rs34362229	0.88[ASN][1000 genomes]
rs35215165	0.92[ASN][1000 genomes]
rs35624765	0.88[ASN][1000 genomes]
rs4420218	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55993533	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59132731	1.00[ASN][1000 genomes]
rs60193609	0.92[ASN][1000 genomes]
rs60646514	0.81[ASN][1000 genomes]
rs60811682	0.81[ASN][1000 genomes]
rs6484200	0.88[ASN][1000 genomes]
rs7105867	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7930530	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7938680	0.88[ASN][1000 genomes]
rs7942458	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7945497	0.92[ASN][1000 genomes]
rs7949962	0.92[ASN][1000 genomes]
rs898735	0.81[ASN][1000 genomes]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26286000-26306200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:26292400-26293800	Enhancers	H9 Cell Line	embryonic stem cell
3	chr11:26292600-26296000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr11:26292800-26296800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:26292800-26297000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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