Variant report

Variant	rs56128475
Chromosome Location	chr15:82411512-82411513
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs60087229	1.00[AFR][1000 genomes]
rs74030917	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv977845	chr15:82398263-82412461	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82398200-82414200	Weak transcription	NHLF	lung
2	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:82399400-82413400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:82399400-82413400	Weak transcription	HMEC	breast
5	chr15:82399600-82413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:82399600-82413600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:82402400-82416600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:82404800-82416600	Weak transcription	Spleen	Spleen
9	chr15:82405200-82415000	Weak transcription	Fetal Stomach	stomach
10	chr15:82405600-82428000	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:82405800-82416800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:82405800-82420200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:82406000-82422600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr15:82406200-82414200	Weak transcription	HSMMtube	muscle
15	chr15:82406200-82414400	Weak transcription	HSMM	muscle
16	chr15:82406200-82414800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:82406200-82430200	Weak transcription	Fetal Muscle Trunk	muscle
18	chr15:82406600-82415400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr15:82406600-82416600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr15:82406800-82423600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr15:82407400-82413200	Weak transcription	Thymus	Thymus
22	chr15:82407400-82415200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr15:82407400-82415200	Weak transcription	Esophagus	oesophagus
24	chr15:82407800-82416400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:82407800-82418800	Weak transcription	Lung	lung
26	chr15:82408000-82412200	Weak transcription	Primary T cells from cord blood	blood
27	chr15:82408000-82415000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr15:82408000-82420800	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr15:82408000-82421000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr15:82408000-82421200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr15:82408000-82422200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr15:82408000-82422400	Weak transcription	Brain Germinal Matrix	brain
33	chr15:82408000-82443600	Weak transcription	Aorta	Aorta
34	chr15:82408200-82416400	Weak transcription	Left Ventricle	heart
35	chr15:82408200-82416400	Weak transcription	Dnd41	blood
36	chr15:82408200-82420000	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr15:82408200-82420400	Weak transcription	Fetal Thymus	thymus
38	chr15:82408400-82415200	Weak transcription	Primary B cells from cord blood	blood
39	chr15:82408400-82417200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr15:82408400-82431800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:82408600-82419000	Weak transcription	Fetal Intestine Large	intestine
42	chr15:82408800-82416400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:82408800-82420400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr15:82408800-82432400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr15:82409000-82415200	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr15:82409200-82412000	Strong transcription	Fetal Intestine Small	intestine
47	chr15:82409600-82412200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr15:82409600-82416000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr15:82409800-82414000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:82409800-82422200	Weak transcription	Pancreas	Pancrea

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