Variant report

Variant	rs561286
Chromosome Location	chr3:150755522-150755523
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150753132..150755675-chr3:150803102..150804711,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144893	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs358953	0.81[AFR][1000 genomes]
rs358959	0.81[EUR][1000 genomes]
rs358960	0.81[EUR][1000 genomes]
rs358961	0.81[EUR][1000 genomes]
rs358968	0.81[AMR][1000 genomes]
rs499151	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs526684	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs593346	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs683725	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs773788	0.83[ASN][1000 genomes]
rs773792	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs810140	0.81[ASN][1000 genomes]
rs9867145	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150753200-150756200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:150753800-150756000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:150754600-150756400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:150754800-150756200	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr3:150755000-150756400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:150755000-150756600	Enhancers	HSMMtube	muscle
7	chr3:150755200-150755800	Enhancers	NHLF	lung
8	chr3:150755200-150756200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:150755200-150756400	Enhancers	HUVEC	blood vessel
10	chr3:150755200-150756600	Enhancers	HSMM	muscle
11	chr3:150755400-150755600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:150755400-150755600	Flanking Active TSS	Osteobl	bone
13	chr3:150755400-150756000	Enhancers	NH-A	brain
14	chr3:150755400-150756200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:150755400-150756200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr3:150755400-150756200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr3:150755400-150756200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:150755400-150756200	Enhancers	Fetal Muscle Leg	muscle
19	chr3:150755400-150756200	Enhancers	NHDF-Ad	bronchial
20	chr3:150755400-150756200	Enhancers	NHEK	skin
21	chr3:150755400-150756400	Enhancers	Ovary	ovary
22	chr3:150755400-150756600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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