Variant report

Variant	rs593346
Chromosome Location	chr3:150756296-150756297
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs499151	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs526684	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs561286	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs683725	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs773788	0.81[ASN][1000 genomes]
rs773792	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs810140	0.83[ASN][1000 genomes]
rs9867145	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150754600-150756400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:150755000-150756400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:150755000-150756600	Enhancers	HSMMtube	muscle
4	chr3:150755200-150756400	Enhancers	HUVEC	blood vessel
5	chr3:150755200-150756600	Enhancers	HSMM	muscle
6	chr3:150755400-150756400	Enhancers	Ovary	ovary
7	chr3:150755400-150756600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr3:150756000-150756400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:150756000-150756600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr3:150756000-150761000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr3:150756200-150756400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:150756200-150756400	Enhancers	Osteobl	bone
13	chr3:150756200-150756600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:150756200-150756600	Enhancers	NH-A	brain
15	chr3:150756200-150756600	Enhancers	NHLF	lung
16	chr3:150756200-150761000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr3:150756200-150761000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:150756200-150761000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:150756200-150761200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:150756200-150761200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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