Variant report

Variant	rs561303400
Chromosome Location	chr15:78112934-78112935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr15:78112493-78112942	MCF-7	breast:	n/a	chr15:78112772-78112782
2	CTCF	chr15:78112465-78113115	HCT-116	colon:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
3	MAZ	chr15:78112538-78112940	K562	blood:	n/a	n/a
4	MAX	chr15:78111477-78113075	A549	lung:	n/a	n/a
5	MAX	chr15:78112425-78113011	A549	lung:	n/a	n/a
6	CTCF	chr15:78112820-78112970	HVMF	connective:	n/a	n/a
7	SIN3A	chr15:78112186-78112954	H1-hESC	embryonic stem cell:	n/a	chr15:78112779-78112790
8	BHLHE40	chr15:78112561-78112947	K562	blood:	n/a	n/a
9	REST	chr15:78111340-78112967	H1-neurons	neurons:	n/a	chr15:78111574-78111587 chr15:78111549-78111562 chr15:78111552-78111565 chr15:78111572-78111590 chr15:78111748-78111761 chr15:78111574-78111587
10	MAX	chr15:78112127-78113107	H1-hESC	embryonic stem cell:	n/a	n/a
11	ZNF263	chr15:78111583-78114384	HEK293-T-REx	kidney:	n/a	chr15:78113198-78113207
12	UBTF	chr15:78112134-78112978	K562	blood:	n/a	n/a
13	CTCF	chr15:78112223-78114736	SK-N-SH	brain:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781 chr15:78113982-78114000
14	RAD21	chr15:78112544-78112958	SK-N-SH_RA	brain:	n/a	chr15:78112772-78112782
15	CTCF	chr15:78112610-78112948	GM12878	blood:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
16	SMC3	chr15:78112627-78113047	K562	blood:	n/a	chr15:78112772-78112782
17	CTCF	chr15:78112557-78112968	K562	blood:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
18	ZNF143	chr15:78112647-78112943	K562	blood:	n/a	chr15:78112846-78112864
19	CTCF	chr15:78112509-78113097	MCF-7	breast:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
20	RAD21	chr15:78112597-78112944	H1-hESC	embryonic stem cell:	n/a	chr15:78112772-78112782
21	CTCF	chr15:78112626-78112946	K562	blood:	n/a	chr15:78112771-78112781
22	POLR2A	chr15:78111620-78118444	SK-N-MC	brain:	n/a	n/a
23	HMGN3	chr15:78112346-78112946	K562	blood:	n/a	n/a
24	POLR2A	chr15:78111325-78112987	H1-neurons	neurons:	n/a	n/a
25	E2F6	chr15:78112416-78112950	A549	lung:	n/a	chr15:78112646-78112657 chr15:78112466-78112475
26	ZBTB7A	chr15:78112445-78112989	ECC-1	luminal epithelium:	n/a	chr15:78112774-78112783 chr15:78112621-78112629
27	RAD21	chr15:78112385-78113087	SK-N-SH	brain:	n/a	chr15:78112772-78112782 chr15:78112433-78112445
28	RAD21	chr15:78112326-78113049	H1-hESC	embryonic stem cell:	n/a	chr15:78112772-78112782 chr15:78112433-78112445
29	CREB1	chr15:78112210-78112963	A549	lung:	n/a	n/a
30	MYC	chr15:78112659-78112993	MCF-7	breast:	n/a	n/a
31	CTCF	chr15:78112533-78113098	HCT-116	colon:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
32	ZBTB7A	chr15:78111679-78112968	ECC-1	luminal epithelium:	n/a	chr15:78111887-78111896 chr15:78112774-78112783 chr15:78112621-78112629
33	RAD21	chr15:78112503-78112941	MCF-7	breast:	n/a	chr15:78112772-78112782
34	CTCF	chr15:78112362-78114448	A549	lung:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781 chr15:78113982-78114000
35	CTCF	chr15:78112920-78113070	HVMF	connective:	n/a	n/a
36	RAD21	chr15:78112490-78112993	A549	lung:	n/a	chr15:78112772-78112782
37	CTCF	chr15:78112571-78112941	A549	lung:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
38	CTCF	chr15:78112627-78112951	MCF-7	breast:	n/a	chr15:78112771-78112781
39	CTCF	chr15:78112800-78112950	GM12873	blood:	n/a	n/a
40	CTCF	chr15:78112511-78112987	K562	blood:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
41	E2F6	chr15:78112308-78112963	K562	blood:	n/a	chr15:78112646-78112657 chr15:78112466-78112475
42	CTCF	chr15:78112680-78112970	HUVEC	blood vessel:	n/a	chr15:78112771-78112781
43	RAD21	chr15:78112501-78113042	ECC-1	luminal epithelium:	n/a	chr15:78112772-78112782
44	POLR2A	chr15:78112900-78113007	MCF-7	breast:	n/a	n/a
45	CTCF	chr15:78112840-78112990	GM12873	blood:	n/a	n/a
46	CTCF	chr15:78112574-78113034	MCF-7	breast:	n/a	chr15:78112615-78112628 chr15:78112615-78112624 chr15:78112771-78112781
47	RAD21	chr15:78112536-78112978	H1-hESC	embryonic stem cell:	n/a	chr15:78112772-78112782

No.	Distal block	Cell Line	Cell type
1	chr15:77923251..77928296-chr15:78111448..78115771,8	MCF-7	breast:
2	chr15:78109668..78112280-chr15:78112604..78115106,3	MCF-7	breast:
3	chr15:77925397..77928069-chr15:78112259..78116246,3	K562	blood:
4	chr15:77925397..77927315-chr15:78112259..78115116,2	K562	blood:
5	chr15:77925299..77927652-chr15:78112444..78114100,3	MCF-7	breast:
6	chr15:77951840..77952665-chr15:78112887..78114250,4	MCF-7	breast:
7	chr15:77925435..77927439-chr15:78112259..78115090,22	K562	blood:
8	chr15:77925072..77927787-chr15:78111223..78115888,59	MCF-7	breast:

Variant related genes	Relation type
LINGO1	TF binding region
ENSG00000259281	Chromatin interaction
ENSG00000169783	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
5	nsv833061	chr15:77998374-78121905	Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv904421	chr15:78041789-78129964	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv904423	chr15:78059488-78119345	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv904424	chr15:78059488-78158893	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv471255	chr15:78063585-78131097	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv570171	chr15:78064664-78131097	Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv904425	chr15:78064664-78153850	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
14	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
15	esv1806493	chr15:78106177-78119345	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	esv3321779	chr15:78109497-78113895	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	esv3375400	chr15:78110347-78113670	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv570179	chr15:78111223-78113421	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
19	esv1796951	chr15:78111223-78119345	Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
20	esv1849555	chr15:78111223-78119345	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv570194	chr15:78111443-78113421	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
22	esv1813777	chr15:78111702-78119345	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78110600-78113000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr15:78110600-78113000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr15:78110600-78113200	Active TSS	Brain Angular Gyrus	brain
4	chr15:78110800-78113000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
5	chr15:78111000-78113000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
6	chr15:78111000-78113600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr15:78111200-78113000	Active TSS	Brain Anterior Caudate	brain
8	chr15:78111600-78113000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:78111600-78113000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr15:78112000-78113000	Bivalent/Poised TSS	Esophagus	oesophagus
11	chr15:78112000-78114200	Bivalent Enhancer	Placenta	Placenta
12	chr15:78112200-78113000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:78112400-78113000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr15:78112400-78113000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
15	chr15:78112400-78113000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
16	chr15:78112400-78113200	Bivalent Enhancer	Spleen	Spleen
17	chr15:78112600-78113000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:78112600-78113000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:78112600-78113000	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
20	chr15:78112600-78113000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
21	chr15:78112600-78113000	Enhancers	Placenta Amnion	Placenta Amnion
22	chr15:78112600-78113000	Bivalent Enhancer	K562	blood
23	chr15:78112600-78113200	Bivalent Enhancer	Colonic Mucosa	Colon
24	chr15:78112600-78113800	Bivalent/Poised TSS	Fetal Brain Female	brain
25	chr15:78112600-78114600	Bivalent Enhancer	Fetal Muscle Leg	muscle
26	chr15:78112600-78115800	Bivalent Enhancer	Fetal Intestine Small	intestine
27	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	ES-WA7 Cell Line	embryonic stem cell
28	chr15:78112800-78113000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
29	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
30	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
31	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:78112800-78113000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
34	chr15:78112800-78113000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
35	chr15:78112800-78113000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
36	chr15:78112800-78113000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr15:78112800-78113000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr15:78112800-78113000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr15:78112800-78113000	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:78112800-78113000	Bivalent Enhancer	Liver	Liver
41	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
42	chr15:78112800-78113000	Bivalent Enhancer	Fetal Intestine Large	intestine
43	chr15:78112800-78113000	Bivalent Enhancer	Right Ventricle	heart
44	chr15:78112800-78113000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
45	chr15:78112800-78113000	Flanking Bivalent TSS/Enh	HMEC	breast
46	chr15:78112800-78113200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
47	chr15:78112800-78113200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
48	chr15:78112800-78113200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
49	chr15:78112800-78113200	Flanking Bivalent TSS/Enh	Brain Dorsolateral Prefrontal Cortex	brain
50	chr15:78112800-78113200	Enhancers	Pancreas	Pancrea

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