Variant report

Variant	rs56130500
Chromosome Location	chr9:24487235-24487236
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs59988532	1.00[ASN][1000 genomes]
rs73652174	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73652175	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73652201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73653303	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv892795	chr9:24170867-24488294	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
3	esv2753670	chr9:24332200-24532400	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
4	nsv533263	chr9:24386546-24942407	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv1032395	chr9:24396046-24945219	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1030066	chr9:24419824-24500828	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases
7	nsv613850	chr9:24424199-24539632	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv892797	chr9:24428847-24511918	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	nsv870357	chr9:24449398-24555784	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv613851	chr9:24457291-24495241	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
11	nsv892798	chr9:24457291-24495241	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
12	nsv1027072	chr9:24459843-24554174	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv892799	chr9:24462860-24495241	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
14	nsv892800	chr9:24462860-24498325	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
15	nsv1034544	chr9:24466876-24493733	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
16	nsv438099	chr9:24467698-24494302	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv527099	chr9:24467698-24495241	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
18	nsv818692	chr9:24467698-24495241	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
19	esv2757328	chr9:24467996-24528103	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
20	esv2759682	chr9:24467996-24528103	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24480000-24487400	Weak transcription	Fetal Muscle Leg	muscle
2	chr9:24486000-24488400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:24486400-24490200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr9:24486600-24490400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr9:24487000-24487800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:24487000-24487800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr9:24487000-24488400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr9:24487000-24490000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:24487200-24487400	Enhancers	Fetal Kidney	kidney
10	chr9:24487200-24487600	Enhancers	Adipose Nuclei	Adipose
11	chr9:24487200-24487600	Enhancers	Fetal Lung	lung
12	chr9:24487200-24488000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr9:24487200-24488200	Enhancers	H9 Cell Line	embryonic stem cell
14	chr9:24487200-24488200	Enhancers	Fetal Stomach	stomach
15	chr9:24487200-24488400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr9:24487200-24488400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr9:24487200-24489600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr9:24487200-24490200	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr9:24487200-24490400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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