Variant report

Variant	rs56133620
Chromosome Location	chr14:70964962-70964963
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10132398	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142700	1.00[ASN][1000 genomes]
rs28520402	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45447692	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45466397	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55638149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55787136	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55957520	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56263002	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160153	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719703	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719704	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719706	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719708	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719709	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719712	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719714	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719717	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719725	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719727	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72719758	0.84[AFR][1000 genomes]
rs72733802	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735703	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735708	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735727	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735728	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735746	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735753	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735754	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735757	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735760	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735766	0.85[EUR][1000 genomes]
rs72735767	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735768	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565042	chr14:70951234-71011734	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1050615	chr14:70954149-71013235	Weak transcription ZNF genes & repeats Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv2763072	chr14:70954149-71013247	Strong transcription ZNF genes & repeats Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70955600-70965600	Weak transcription	Right Ventricle	heart
2	chr14:70956600-70966600	Weak transcription	Left Ventricle	heart
3	chr14:70958600-70966600	Weak transcription	Brain Anterior Caudate	brain
4	chr14:70958600-70967200	Weak transcription	Brain Angular Gyrus	brain
5	chr14:70958600-70989000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:70958800-70993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr14:70959200-70965400	Weak transcription	Brain Hippocampus Middle	brain
8	chr14:70959200-70965800	Weak transcription	Adipose Nuclei	Adipose
9	chr14:70959600-70965000	Weak transcription	Colon Smooth Muscle	Colon
10	chr14:70962400-70965000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:70963200-70965000	Strong transcription	Brain Inferior Temporal Lobe	brain
12	chr14:70963200-70965200	Strong transcription	Stomach Smooth Muscle	stomach
13	chr14:70963800-70965000	Strong transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:70964200-70967200	Weak transcription	Liver	Liver
15	chr14:70964800-70965000	Active TSS	Spleen	Spleen

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