Variant report

Variant	rs56134669
Chromosome Location	chr13:70058443-70058444
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs1041374	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1041375	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1041376	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1330538	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17085098	1.00[ASN][1000 genomes]
rs17609022	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609107	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609144	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609278	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609313	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609396	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609445	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609528	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609565	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17609640	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610131	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610268	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610427	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17610491	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17682695	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17683235	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17683319	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17683573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1854745	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1854746	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1962582	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34717477	0.83[ASN][1000 genomes]
rs3901573	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3916210	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55650505	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55720183	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55769848	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55818024	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55892120	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56112906	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56148829	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56193315	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56225708	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56237259	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56240816	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56333025	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56369271	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56392046	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56397253	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57926435	0.83[ASN][1000 genomes]
rs73204573	0.90[EUR][1000 genomes]
rs73204599	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206404	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206407	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206408	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206409	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206412	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206420	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206432	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206438	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206449	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73206450	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206452	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206471	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206473	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206477	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206479	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206481	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206484	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206486	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73206489	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208420	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73208421	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208422	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208423	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208424	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208427	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208430	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73208434	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045844	chr13:70038096-70405435	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3400765	chr13:70051000-70083182	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:70058200-70059400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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