Variant report

Variant	rs561363
Chromosome Location	chr11:86375203-86375204
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:86368500..86371397-chr11:86375081..86378008,3	MCF-7	breast:
2	chr11:86374935..86377695-chr11:86510735..86513709,5	MCF-7	breast:
3	chr11:86360141..86362731-chr11:86373368..86375959,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12281596	1.00[ASN][1000 genomes]
rs480290	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs484481	1.00[ASN][1000 genomes]
rs503195	1.00[ASN][1000 genomes]
rs530278	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs566633	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs591474	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs595031	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs619829	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs642780	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs643157	1.00[ASN][1000 genomes]
rs661115	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs668984	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs672280	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs673118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs674481	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs688079	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv555704	chr11:86344677-86386784	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86362000-86378000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:86366200-86380000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:86366600-86379800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:86369400-86375600	Weak transcription	Aorta	Aorta
5	chr11:86369800-86379600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr11:86369800-86379600	Weak transcription	Lung	lung
7	chr11:86369800-86379800	Weak transcription	Brain Anterior Caudate	brain
8	chr11:86369800-86381200	Weak transcription	Pancreas	Pancrea
9	chr11:86369800-86382000	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:86370000-86375400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr11:86370000-86382000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr11:86370400-86379600	Weak transcription	Fetal Brain Female	brain
13	chr11:86370600-86379400	Weak transcription	Fetal Brain Male	brain
14	chr11:86371200-86380800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr11:86371400-86376200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:86371400-86376200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:86371400-86378600	Weak transcription	Osteobl	bone
18	chr11:86371400-86379600	Weak transcription	Right Atrium	heart
19	chr11:86371400-86381000	Weak transcription	HUVEC	blood vessel
20	chr11:86371400-86381000	Weak transcription	NHLF	lung
21	chr11:86371400-86381200	Weak transcription	Stomach Mucosa	stomach
22	chr11:86371400-86381400	Weak transcription	HSMM	muscle
23	chr11:86371600-86375400	Weak transcription	A549	lung
24	chr11:86371600-86376000	Weak transcription	Fetal Heart	heart
25	chr11:86371600-86376200	Weak transcription	HMEC	breast
26	chr11:86371600-86376400	Weak transcription	NHEK	skin
27	chr11:86371600-86380800	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr11:86371800-86378600	Weak transcription	Fetal Lung	lung
29	chr11:86372400-86376400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:86372400-86381200	Weak transcription	NHDF-Ad	bronchial
31	chr11:86372600-86375800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr11:86372600-86376200	Enhancers	Ovary	ovary
33	chr11:86372800-86375600	Weak transcription	Left Ventricle	heart
34	chr11:86372800-86375800	Weak transcription	Right Ventricle	heart
35	chr11:86372800-86377000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr11:86372800-86379600	Weak transcription	Brain Angular Gyrus	brain
37	chr11:86373000-86375800	Weak transcription	Psoas Muscle	Psoas
38	chr11:86373000-86381200	Weak transcription	Primary T cells from cord blood	blood
39	chr11:86373000-86381200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr11:86373600-86382000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr11:86373800-86375800	Enhancers	Rectal Smooth Muscle	rectum
42	chr11:86373800-86376800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr11:86374000-86376400	Enhancers	Stomach Smooth Muscle	stomach
44	chr11:86374200-86376000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:86374200-86376000	Enhancers	Fetal Intestine Large	intestine
46	chr11:86374400-86375600	Weak transcription	Small Intestine	intestine
47	chr11:86374400-86376600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr11:86374600-86375800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:86374600-86375800	Weak transcription	Skeletal Muscle Female	skeletal muscle
50	chr11:86374600-86377600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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