Variant report

Variant	rs643157
Chromosome Location	chr11:86389311-86389312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:86386903..86389522-chr11:86451138..86453581,3	MCF-7	breast:
2	chr11:86387904..86390324-chr11:86451509..86453266,2	MCF-7	breast:
3	chr11:86386748..86389830-chr11:86391852..86394746,3	MCF-7	breast:
4	chr11:86379027..86389838-chr11:86504553..86514376,29	MCF-7	breast:
5	chr11:86387888..86391324-chr11:86509272..86511991,3	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PRSS23-4	chr11:86388566-86389686	l_530_chr11:86344324-86389623_testes

No data

Variant related genes	Relation type
ENSG00000150687	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10219261	1.00[AMR][1000 genomes]
rs11234737	1.00[AMR][1000 genomes]
rs11234817	1.00[AMR][1000 genomes]
rs11234819	1.00[AMR][1000 genomes]
rs11234820	1.00[AMR][1000 genomes]
rs11234821	1.00[AMR][1000 genomes]
rs11501851	1.00[AMR][1000 genomes]
rs11501852	1.00[AMR][1000 genomes]
rs12280121	1.00[AMR][1000 genomes]
rs12280127	1.00[AMR][1000 genomes]
rs12281596	1.00[ASN][1000 genomes]
rs12281724	1.00[AMR][1000 genomes]
rs12291065	1.00[AMR][1000 genomes]
rs480290	1.00[ASN][1000 genomes]
rs484481	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4944623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs503195	1.00[ASN][1000 genomes]
rs530278	1.00[ASN][1000 genomes]
rs561363	1.00[ASN][1000 genomes]
rs566633	1.00[ASN][1000 genomes]
rs591474	1.00[ASN][1000 genomes]
rs595031	1.00[ASN][1000 genomes]
rs619829	1.00[ASN][1000 genomes]
rs642780	1.00[ASN][1000 genomes]
rs661115	1.00[ASN][1000 genomes]
rs668984	1.00[ASN][1000 genomes]
rs672280	1.00[ASN][1000 genomes]
rs673118	1.00[ASN][1000 genomes]
rs674481	1.00[ASN][1000 genomes]
rs675455	1.00[AMR][1000 genomes]
rs688079	1.00[ASN][1000 genomes]
rs9804580	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv555665	chr11:86230898-86417553	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1055071	chr11:86301240-86465465	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv428263	chr11:86357990-86508480	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86383800-86391600	Weak transcription	Right Ventricle	heart
2	chr11:86383800-86393000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:86383800-86393200	Weak transcription	Aorta	Aorta
4	chr11:86384000-86389400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr11:86384000-86389400	Weak transcription	Osteobl	bone
6	chr11:86384000-86392000	Weak transcription	Fetal Lung	lung
7	chr11:86384200-86389400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:86384200-86389600	Weak transcription	NHLF	lung
9	chr11:86384400-86389400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:86384400-86389400	Weak transcription	Brain Angular Gyrus	brain
11	chr11:86384400-86390200	Enhancers	Colon Smooth Muscle	Colon
12	chr11:86384400-86392600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr11:86384800-86389400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr11:86384800-86389400	Weak transcription	Fetal Brain Male	brain
15	chr11:86384800-86389400	Weak transcription	Fetal Heart	heart
16	chr11:86384800-86393200	Weak transcription	Pancreas	Pancrea
17	chr11:86384800-86397800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:86384800-86400400	Weak transcription	Gastric	stomach
19	chr11:86385200-86411400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr11:86385600-86391600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr11:86386400-86389400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:86386400-86391600	Weak transcription	Stomach Mucosa	stomach
23	chr11:86386600-86431000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr11:86387000-86390800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:86387000-86390800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:86387000-86392800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr11:86387400-86390200	Enhancers	iPS-18 Cell Line	embryonic stem cell
28	chr11:86387600-86391400	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr11:86387800-86389600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr11:86387800-86390400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr11:86388000-86389400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:86388000-86389400	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:86388000-86389600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr11:86388000-86390200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:86388000-86390400	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr11:86388000-86391400	Weak transcription	Fetal Intestine Small	intestine
37	chr11:86388000-86392000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr11:86388000-86409600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr11:86388400-86389400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr11:86388400-86390400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr11:86388400-86391200	Weak transcription	Psoas Muscle	Psoas
42	chr11:86388600-86390000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr11:86388600-86391400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr11:86388800-86389600	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr11:86388800-86390200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr11:86388800-86390200	Enhancers	A549	lung
47	chr11:86388800-86390600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
48	chr11:86389000-86389600	Enhancers	Skeletal Muscle Female	skeletal muscle
49	chr11:86389000-86390200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:86389000-86390200	Enhancers	Ovary	ovary

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