Variant report

Variant	rs56141029
Chromosome Location	chr5:14322965-14322966
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:14318688..14320392-chr5:14322958..14325742,2	MCF-7	breast:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10062034	1.00[AMR][1000 genomes]
rs10076925	1.00[AMR][1000 genomes]
rs16903350	0.83[AMR][1000 genomes]
rs16903399	1.00[AMR][1000 genomes]
rs16903467	1.00[AMR][1000 genomes]
rs55750919	1.00[AMR][1000 genomes]
rs55754427	1.00[AMR][1000 genomes]
rs55773296	1.00[AMR][1000 genomes]
rs56114434	1.00[AMR][1000 genomes]
rs56227025	1.00[AMR][1000 genomes]
rs56664186	1.00[AMR][1000 genomes]
rs56712870	1.00[AMR][1000 genomes]
rs57560019	1.00[AMR][1000 genomes]
rs57974400	1.00[AMR][1000 genomes]
rs58324829	1.00[AMR][1000 genomes]
rs58443103	1.00[AMR][1000 genomes]
rs58716074	0.83[AMR][1000 genomes]
rs58897996	1.00[AMR][1000 genomes]
rs59499572	0.83[AMR][1000 genomes]
rs59853866	1.00[AMR][1000 genomes]
rs60077210	1.00[AMR][1000 genomes]
rs60568524	0.83[AMR][1000 genomes]
rs61180647	0.83[AMR][1000 genomes]
rs61396062	1.00[AMR][1000 genomes]
rs61509800	0.83[AMR][1000 genomes]
rs6868596	0.83[AMR][1000 genomes]
rs73748806	1.00[AMR][1000 genomes]
rs73748810	0.83[AMR][1000 genomes]
rs73748811	1.00[AMR][1000 genomes]
rs73749082	1.00[AMR][1000 genomes]
rs73749083	1.00[AMR][1000 genomes]
rs73749085	1.00[AMR][1000 genomes]
rs73749234	1.00[AMR][1000 genomes]
rs73749235	1.00[AMR][1000 genomes]
rs73751307	0.83[AMR][1000 genomes]
rs73751311	0.83[AMR][1000 genomes]
rs73751318	0.83[AMR][1000 genomes]
rs73751322	1.00[AMR][1000 genomes]
rs73751323	1.00[AMR][1000 genomes]
rs73751327	0.83[AMR][1000 genomes]
rs73751329	1.00[AMR][1000 genomes]
rs73751335	0.83[AMR][1000 genomes]
rs73751336	0.83[AMR][1000 genomes]
rs73751337	1.00[AMR][1000 genomes]
rs73751338	0.83[AMR][1000 genomes]
rs73751339	0.83[AMR][1000 genomes]
rs73751340	0.83[AMR][1000 genomes]
rs7703674	0.83[AMR][1000 genomes]
rs7705426	0.83[AMR][1000 genomes]
rs7713114	0.83[AMR][1000 genomes]
rs7716460	1.00[AMR][1000 genomes]
rs7723309	1.00[AMR][1000 genomes]
rs7724084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14278000-14341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr5:14288000-14324000	Strong transcription	Primary B cells from peripheral blood	blood
3	chr5:14303800-14323600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr5:14304000-14323800	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr5:14305400-14326800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr5:14309600-14326600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:14310400-14342000	Weak transcription	Stomach Mucosa	stomach
8	chr5:14310600-14344600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:14313600-14325000	Weak transcription	Fetal Heart	heart
10	chr5:14313800-14337600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:14314000-14326800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:14314200-14323600	Strong transcription	HSMMtube	muscle
13	chr5:14314200-14325600	Weak transcription	Psoas Muscle	Psoas
14	chr5:14314200-14342200	Weak transcription	Small Intestine	intestine
15	chr5:14314600-14326800	Strong transcription	Muscle Satellite Cultured Cells	--
16	chr5:14314600-14338200	Strong transcription	HSMM	muscle
17	chr5:14314800-14326600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:14314800-14342200	Strong transcription	Osteobl	bone
19	chr5:14315000-14325200	Weak transcription	Primary neutrophils fromperipheralblood	blood
20	chr5:14315200-14323200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:14316200-14324000	Strong transcription	Fetal Intestine Large	intestine
22	chr5:14316200-14325800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr5:14316200-14332600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr5:14316400-14324000	Strong transcription	Adipose Nuclei	Adipose
25	chr5:14316400-14324000	Strong transcription	NHEK	skin
26	chr5:14316400-14326600	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr5:14316600-14323800	Strong transcription	Fetal Stomach	stomach
28	chr5:14316800-14323000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr5:14317200-14323800	Strong transcription	Fetal Muscle Leg	muscle
30	chr5:14317200-14326800	Strong transcription	NHLF	lung
31	chr5:14317200-14330400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr5:14317400-14326200	Weak transcription	Fetal Kidney	kidney
33	chr5:14317600-14323200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr5:14317800-14326000	Weak transcription	Brain Angular Gyrus	brain
35	chr5:14317800-14326000	Weak transcription	Gastric	stomach
36	chr5:14317800-14326200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr5:14317800-14328000	Weak transcription	Brain Substantia Nigra	brain
38	chr5:14317800-14328200	Weak transcription	Fetal Lung	lung
39	chr5:14317800-14330800	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr5:14318000-14329200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:14318000-14333000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr5:14318000-14333000	Weak transcription	Thymus	Thymus
43	chr5:14318000-14336600	Weak transcription	Fetal Thymus	thymus
44	chr5:14318800-14324000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr5:14319200-14323000	Weak transcription	Brain Anterior Caudate	brain
46	chr5:14319200-14323000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr5:14319200-14325200	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr5:14319200-14325400	Weak transcription	Brain Germinal Matrix	brain
49	chr5:14319200-14328200	Weak transcription	Brain Hippocampus Middle	brain
50	chr5:14319200-14349400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links