Variant report

Variant	rs73751329
Chromosome Location	chr5:14280888-14280889
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:14273020..14274776-chr5:14278391..14281158,2	MCF-7	breast:
2	chr5:14107611..14110388-chr5:14277452..14281941,4	MCF-7	breast:
3	chr5:14268388..14270560-chr5:14279679..14282134,3	MCF-7	breast:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10062034	1.00[AMR][1000 genomes]
rs10076925	1.00[AMR][1000 genomes]
rs16903350	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs16903399	1.00[AMR][1000 genomes]
rs16903467	1.00[AMR][1000 genomes]
rs55750919	1.00[AMR][1000 genomes]
rs55754427	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55773296	1.00[AMR][1000 genomes]
rs56114434	1.00[AMR][1000 genomes]
rs56141029	1.00[AMR][1000 genomes]
rs56227025	1.00[AMR][1000 genomes]
rs56664186	1.00[AMR][1000 genomes]
rs56712870	1.00[AMR][1000 genomes]
rs57560019	1.00[AMR][1000 genomes]
rs57974400	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58324829	1.00[AMR][1000 genomes]
rs58443103	1.00[AMR][1000 genomes]
rs58716074	0.83[AMR][1000 genomes]
rs58897996	1.00[AMR][1000 genomes]
rs59499572	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs59853866	1.00[AMR][1000 genomes]
rs60077210	1.00[AMR][1000 genomes]
rs60568524	0.83[AMR][1000 genomes]
rs61180647	0.83[AMR][1000 genomes]
rs61396062	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61509800	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs6868596	0.83[AMR][1000 genomes]
rs73748806	1.00[AMR][1000 genomes]
rs73748810	0.83[AMR][1000 genomes]
rs73748811	1.00[AMR][1000 genomes]
rs73749082	1.00[AMR][1000 genomes]
rs73749083	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749085	1.00[AMR][1000 genomes]
rs73749234	1.00[AMR][1000 genomes]
rs73749235	1.00[AMR][1000 genomes]
rs73751307	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73751311	0.83[AMR][1000 genomes]
rs73751318	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73751322	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751323	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751327	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs73751335	0.83[AMR][1000 genomes]
rs73751336	0.83[AMR][1000 genomes]
rs73751337	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73751338	0.83[AMR][1000 genomes]
rs73751339	0.83[AMR][1000 genomes]
rs73751340	0.83[AMR][1000 genomes]
rs7703674	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7705426	0.83[AMR][1000 genomes]
rs7713114	0.83[AMR][1000 genomes]
rs7716460	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7723309	1.00[AMR][1000 genomes]
rs7724084	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830209	chr5:14154989-14301758	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv948355	chr5:14160447-14395478	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1026914	chr5:14237782-14751588	Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830210	chr5:14255039-14431552	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:14265200-14293000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:14265400-14284600	Weak transcription	Stomach Mucosa	stomach
3	chr5:14265400-14286600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:14268600-14291000	Weak transcription	Fetal Kidney	kidney
5	chr5:14269200-14286400	Weak transcription	Pancreas	Pancrea
6	chr5:14269200-14286600	Weak transcription	Spleen	Spleen
7	chr5:14270200-14290800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:14270400-14283200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:14270400-14284400	Weak transcription	Colonic Mucosa	Colon
10	chr5:14270400-14284600	Weak transcription	Brain Germinal Matrix	brain
11	chr5:14270400-14284800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr5:14270400-14284800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:14270400-14286400	Weak transcription	Fetal Intestine Small	intestine
14	chr5:14270400-14286800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr5:14270400-14288800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr5:14270400-14289400	Weak transcription	Gastric	stomach
17	chr5:14270400-14293000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr5:14270400-14305200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr5:14270400-14313600	Weak transcription	Small Intestine	intestine
20	chr5:14270800-14281400	Weak transcription	Fetal Stomach	stomach
21	chr5:14270800-14282000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:14270800-14286800	Weak transcription	Fetal Brain Male	brain
23	chr5:14270800-14293000	Weak transcription	Brain Hippocampus Middle	brain
24	chr5:14271000-14295800	Weak transcription	Brain Angular Gyrus	brain
25	chr5:14271800-14284400	Weak transcription	Aorta	Aorta
26	chr5:14272200-14281600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:14273600-14284200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:14276600-14281800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr5:14276600-14284600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:14276800-14290800	Weak transcription	Esophagus	oesophagus
31	chr5:14277200-14281000	Weak transcription	Fetal Brain Female	brain
32	chr5:14277200-14291000	Weak transcription	Brain Anterior Caudate	brain
33	chr5:14277600-14283000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr5:14277800-14284600	Weak transcription	Primary T cells from cord blood	blood
35	chr5:14277800-14286800	Weak transcription	Brain Substantia Nigra	brain
36	chr5:14278000-14284600	Weak transcription	Brain Cingulate Gyrus	brain
37	chr5:14278000-14341200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
38	chr5:14278200-14281200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr5:14278400-14281600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
40	chr5:14278400-14283000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr5:14278400-14284200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:14278600-14281600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr5:14278600-14284400	Weak transcription	Colon Smooth Muscle	Colon
44	chr5:14278600-14284800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr5:14278600-14285800	Strong transcription	HSMM	muscle
46	chr5:14278600-14296200	Strong transcription	NH-A	brain
47	chr5:14279200-14285400	Strong transcription	Primary B cells from cord blood	blood
48	chr5:14279400-14284200	Strong transcription	NHDF-Ad	bronchial
49	chr5:14279600-14281000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr5:14279600-14284000	Strong transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links