Variant report

Variant	rs56143956
Chromosome Location	chr1:210506811-210506812
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs55716781	1.00[AMR][1000 genomes]
rs56226930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59539784	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8769	chr1:210403509-210564588	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	126 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210503200-210507200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr1:210503200-210507400	Enhancers	Primary T cells fromperipheralblood	blood
3	chr1:210503200-210516800	Weak transcription	Lung	lung
4	chr1:210503600-210546800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:210504200-210508200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:210504200-210512800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:210504400-210507200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr1:210504400-210514800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:210504400-210516400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:210504600-210507600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr1:210505200-210507400	Enhancers	Thymus	Thymus
12	chr1:210505400-210507000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:210505400-210507000	Enhancers	Primary T killer memory cells from peripheral blood	blood
14	chr1:210505600-210507200	Enhancers	Fetal Thymus	thymus
15	chr1:210506600-210507200	Enhancers	GM12878-XiMat	blood
16	chr1:210506600-210508000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:210506600-210514000	Weak transcription	Fetal Heart	heart
18	chr1:210506600-210515600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr1:210506800-210512800	Weak transcription	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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