Variant report

Variant	rs56146438
Chromosome Location	chr7:102448455-102448456
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102446461..102450682-chr7:102452402..102456233,5	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10487281	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10487284	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11496066	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12113073	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12113233	1.00[ASN][1000 genomes]
rs12113759	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17135875	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17474893	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2041094	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2411061	1.00[ASN][1000 genomes]
rs3893651	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4610658	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55825804	0.83[ASN][1000 genomes]
rs55849741	1.00[ASN][1000 genomes]
rs55851590	1.00[ASN][1000 genomes]
rs56186316	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56336567	1.00[ASN][1000 genomes]
rs727175	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73192015	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73192025	1.00[ASN][1000 genomes]
rs73192026	1.00[ASN][1000 genomes]
rs7781557	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7790451	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv1025363	chr7:102072448-102471485	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv469620	chr7:102296392-102454063	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv482714	chr7:102296392-102454063	Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	esv2761100	chr7:102335787-102481978	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
9	nsv470382	chr7:102375663-102538515	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv608057	chr7:102440184-102538515	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102390800-102448800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr7:102391600-102448600	Weak transcription	Adipose Nuclei	Adipose
3	chr7:102416400-102467600	Weak transcription	Brain Anterior Caudate	brain
4	chr7:102419600-102454200	Weak transcription	Osteobl	bone
5	chr7:102419600-102456000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:102419800-102454000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr7:102420400-102448600	Weak transcription	K562	blood
8	chr7:102420800-102449000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:102421600-102449000	Weak transcription	Liver	Liver
10	chr7:102421600-102452000	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr7:102421600-102475600	Weak transcription	Fetal Thymus	thymus
12	chr7:102422000-102448800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:102422000-102474800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr7:102422000-102476000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr7:102436000-102454000	Weak transcription	NH-A	brain
16	chr7:102437200-102448800	Weak transcription	Fetal Stomach	stomach
17	chr7:102437400-102452000	Weak transcription	HUVEC	blood vessel
18	chr7:102437600-102449200	Weak transcription	Fetal Lung	lung
19	chr7:102439000-102459600	Weak transcription	Brain Hippocampus Middle	brain
20	chr7:102439600-102467400	Weak transcription	Thymus	Thymus
21	chr7:102439800-102463800	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr7:102440400-102449000	Weak transcription	Primary T cells from cord blood	blood
23	chr7:102443000-102451200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr7:102443800-102459600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr7:102444400-102463200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr7:102445200-102451000	Weak transcription	Fetal Intestine Small	intestine
27	chr7:102445600-102448800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr7:102445600-102467600	Weak transcription	Stomach Smooth Muscle	stomach
29	chr7:102445600-102469200	Weak transcription	Fetal Brain Male	brain
30	chr7:102445800-102448800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr7:102445800-102449000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:102445800-102449000	Weak transcription	Fetal Muscle Leg	muscle
33	chr7:102445800-102467400	Weak transcription	Lung	lung
34	chr7:102446200-102467400	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr7:102446600-102448600	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr7:102447000-102448600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr7:102447000-102454000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr7:102447000-102454400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr7:102447000-102469400	Weak transcription	Brain Angular Gyrus	brain
40	chr7:102447200-102453800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr7:102447200-102454000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr7:102447200-102467400	Weak transcription	Primary B cells from cord blood	blood
43	chr7:102447200-102469400	Weak transcription	Fetal Brain Female	brain
44	chr7:102447400-102448800	Weak transcription	Ovary	ovary
45	chr7:102447400-102452000	Weak transcription	HepG2	liver
46	chr7:102447400-102454000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:102447400-102462600	Weak transcription	Fetal Intestine Large	intestine
48	chr7:102447400-102477200	Weak transcription	Psoas Muscle	Psoas
49	chr7:102447600-102450600	Weak transcription	Primary hematopoietic stem cells	blood
50	chr7:102447600-102452000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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