Variant report

Variant	rs561489921
Chromosome Location	chr6:140390830-140390831
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:140385652..140387203-chr6:140390391..140391912,2	K562	blood:
2	chr6:140390060..140392664-chr6:140397671..140399616,2	MCF-7	breast:
3	chr6:140390402..140393143-chr6:140395064..140396701,2	MCF-7	breast:
4	chr6:140388648..140390950-chr6:140391151..140393468,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1019508	chr6:140317472-140434466	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1022987	chr6:140344229-140463916	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv3473486	chr6:140380637-140392373	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
6	esv3473487	chr6:140380684-140392349	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
7	esv3473488	chr6:140380690-140392319	Flanking Active TSS Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
8	esv3473489	chr6:140380774-140392251	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
9	nsv823854	chr6:140385359-140392243	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
10	esv2504654	chr6:140390438-140391916	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv2239429	chr6:140390830-140390831	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140384200-140391400	Weak transcription	Fetal Muscle Leg	muscle
2	chr6:140384400-140391800	Weak transcription	Fetal Stomach	stomach
3	chr6:140384400-140391800	Weak transcription	Stomach Mucosa	stomach
4	chr6:140384400-140392800	Weak transcription	Aorta	Aorta
5	chr6:140384600-140391200	Weak transcription	Fetal Lung	lung
6	chr6:140384600-140392000	Weak transcription	HSMMtube	muscle
7	chr6:140384600-140392200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:140384600-140394000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:140385200-140391200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:140385800-140391000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr6:140385800-140391200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:140385800-140391800	Weak transcription	Adipose Nuclei	Adipose
13	chr6:140386000-140391000	Weak transcription	Ovary	ovary
14	chr6:140386000-140392200	Weak transcription	Fetal Intestine Small	intestine
15	chr6:140390000-140395400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:140390000-140395400	Enhancers	NHDF-Ad	bronchial
17	chr6:140390200-140395400	Enhancers	NHLF	lung
18	chr6:140390400-140391800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:140390400-140395000	Enhancers	Osteobl	bone
20	chr6:140390800-140394800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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