Variant report

Variant	rs56149740
Chromosome Location	chr6:150005515-150005516
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150004823..150006721-chr6:150008544..150010327,2	K562	blood:
2	chr6:150005221..150006846-chr6:150008544..150010476,2	K562	blood:
3	chr6:150004563..150007128-chr6:150016460..150020712,4	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11963610	1.00[ASN][1000 genomes]
rs11966407	1.00[ASN][1000 genomes]
rs11968366	1.00[ASN][1000 genomes]
rs17088269	1.00[ASN][1000 genomes]
rs3806983	1.00[ASN][1000 genomes]
rs58651413	1.00[ASN][1000 genomes]
rs6927395	1.00[ASN][1000 genomes]
rs73606794	1.00[ASN][1000 genomes]
rs9765961	1.00[ASN][1000 genomes]
rs9766101	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149977800-150005800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:149980000-150008000	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
7	chr6:149980800-150005800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:149981200-150018800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr6:149983800-150005800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
11	chr6:149988200-150008000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:149994600-150012600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
15	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr6:149998800-150009600	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:149999800-150005800	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr6:150000000-150022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:150001600-150006200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:150002800-150005600	Strong transcription	Colonic Mucosa	Colon
21	chr6:150002800-150005800	Strong transcription	Fetal Intestine Small	intestine
22	chr6:150002800-150006000	Strong transcription	Primary neutrophils fromperipheralblood	blood
23	chr6:150002800-150007400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:150002800-150010200	Strong transcription	Fetal Stomach	stomach
25	chr6:150002800-150012800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr6:150003000-150005800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr6:150003000-150006000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:150003200-150005800	Strong transcription	Fetal Lung	lung
29	chr6:150003400-150005600	Strong transcription	Brain Hippocampus Middle	brain
30	chr6:150003400-150005800	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:150003400-150006800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr6:150003600-150005600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr6:150003600-150005600	Strong transcription	Pancreas	Pancrea
34	chr6:150003800-150005600	Strong transcription	GM12878-XiMat	blood
35	chr6:150003800-150005600	Strong transcription	NHDF-Ad	bronchial
36	chr6:150003800-150005800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr6:150003800-150005800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:150003800-150005800	Strong transcription	Liver	Liver
39	chr6:150003800-150005800	Strong transcription	HepG2	liver
40	chr6:150003800-150006000	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr6:150004000-150005800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr6:150004000-150006800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:150004200-150005600	Strong transcription	H1 Cell Line	embryonic stem cell
44	chr6:150004200-150005600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr6:150004200-150005600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:150004200-150005600	Strong transcription	Primary T killer memory cells from peripheral blood	blood
47	chr6:150004200-150005600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr6:150004200-150005600	Genic enhancers	Fetal Heart	heart
49	chr6:150004200-150005600	Strong transcription	Placenta Amnion	Placenta Amnion
50	chr6:150004200-150005600	Genic enhancers	Skeletal Muscle Female	skeletal muscle

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