Variant report

Variant	rs58651413
Chromosome Location	chr6:150025365-150025366
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150022573..150024554-chr6:150024987..150027734,2	K562	blood:
2	chr6:150019221..150021873-chr6:150025151..150027737,4	K562	blood:
3	chr6:150022443..150028756-chr6:150036776..150040441,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11961451	0.83[EUR][1000 genomes]
rs11963610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11966407	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968366	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17088269	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3806983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56149740	1.00[ASN][1000 genomes]
rs57880524	0.83[EUR][1000 genomes]
rs6927395	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73606794	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9765961	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9766101	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
5	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
3	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:150005400-150029800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr6:150005600-150029600	Weak transcription	Aorta	Aorta
7	chr6:150005600-150030200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:150005600-150030200	Weak transcription	Fetal Heart	heart
9	chr6:150005600-150030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:150005600-150030400	Weak transcription	HSMMtube	muscle
11	chr6:150005600-150037400	Weak transcription	Esophagus	oesophagus
12	chr6:150005600-150037800	Weak transcription	Gastric	stomach
13	chr6:150005800-150027400	Weak transcription	Spleen	Spleen
14	chr6:150007800-150027400	Weak transcription	Right Ventricle	heart
15	chr6:150007800-150036800	Weak transcription	Brain Germinal Matrix	brain
16	chr6:150008200-150030000	Weak transcription	Brain Hippocampus Middle	brain
17	chr6:150013600-150037200	Weak transcription	Colonic Mucosa	Colon
18	chr6:150015200-150029800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr6:150015200-150037400	Weak transcription	Lung	lung
20	chr6:150015400-150027800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr6:150015600-150029800	Weak transcription	Fetal Intestine Large	intestine
22	chr6:150015600-150030000	Weak transcription	Fetal Brain Female	brain
23	chr6:150015600-150036400	Weak transcription	Pancreas	Pancrea
24	chr6:150016000-150026600	Weak transcription	HUVEC	blood vessel
25	chr6:150016200-150029800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:150016200-150030000	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:150016800-150031000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr6:150017200-150030000	Weak transcription	Fetal Brain Male	brain
29	chr6:150018200-150031400	Weak transcription	Primary T cells from cord blood	blood
30	chr6:150018200-150037000	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:150018400-150030400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr6:150018600-150026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:150018600-150029600	Weak transcription	Brain Substantia Nigra	brain
34	chr6:150018600-150029800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr6:150019000-150031400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:150019200-150026000	Weak transcription	HMEC	breast
37	chr6:150019400-150026000	Weak transcription	GM12878-XiMat	blood
38	chr6:150019600-150025800	Weak transcription	Osteobl	bone
39	chr6:150019600-150037000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:150020000-150033600	Weak transcription	Ovary	ovary
41	chr6:150020000-150037400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr6:150020600-150029800	Weak transcription	Fetal Stomach	stomach
43	chr6:150021200-150025800	Weak transcription	NHEK	skin
44	chr6:150021200-150027400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:150021200-150036400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:150021200-150037200	Weak transcription	HSMM	muscle
47	chr6:150021800-150036200	Weak transcription	Left Ventricle	heart
48	chr6:150022200-150026400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr6:150022200-150027400	Weak transcription	Right Atrium	heart
50	chr6:150022400-150033600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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