Variant report

Variant	rs56150535
Chromosome Location	chr15:31647722-31647723
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31646378..31648001-chr15:31648194..31650434,2	MCF-7	breast:
2	chr15:31643860..31648950-chr15:31650672..31654273,5	MCF-7	breast:
3	chr15:31647650..31653294-chr15:31653476..31658122,6	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12592176	0.87[AFR][1000 genomes]
rs13329095	0.88[AFR][1000 genomes]
rs13329369	0.87[AFR][1000 genomes]
rs1807100	0.86[AFR][1000 genomes]
rs1961706	0.84[AFR][1000 genomes]
rs28490143	0.87[AFR][1000 genomes]
rs28633674	0.82[AFR][1000 genomes]
rs28705115	0.89[AFR][1000 genomes]
rs4779517	0.84[AFR][1000 genomes]
rs4779518	0.82[AFR][1000 genomes]
rs4779861	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4779862	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4779863	0.84[AFR][1000 genomes]
rs4779864	0.84[AFR][1000 genomes]
rs4779868	0.85[AFR][1000 genomes]
rs7169662	0.88[AFR][1000 genomes]
rs7174079	0.80[AFR][1000 genomes]
rs72722828	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs72722839	0.85[EUR][1000 genomes]
rs8027539	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8036899	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	nsv903838	chr15:31452911-31672128	Strong transcription Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
6	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
9	nsv1050482	chr15:31601016-31672921	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
10	nsv1048082	chr15:31610245-31667000	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv1045944	chr15:31610245-31672921	Enhancers Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
12	nsv516681	chr15:31616674-31675453	Enhancers Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
13	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
14	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
15	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
16	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv1052942	chr15:31624164-31653633	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
19	nsv1051910	chr15:31641254-31672921	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31622800-31657400	Enhancers	Right Atrium	heart
2	chr15:31625200-31649000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr15:31638400-31655400	Enhancers	Psoas Muscle	Psoas
4	chr15:31641000-31655600	Enhancers	Left Ventricle	heart
5	chr15:31641200-31658400	Enhancers	Liver	Liver
6	chr15:31641800-31648400	Enhancers	Small Intestine	intestine
7	chr15:31644400-31647800	Enhancers	Brain Angular Gyrus	brain
8	chr15:31644400-31650600	Enhancers	Fetal Brain Male	brain
9	chr15:31645200-31652400	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr15:31645200-31653200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:31645400-31652400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:31645400-31653200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:31645800-31651400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr15:31645800-31652600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:31645800-31652800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr15:31645800-31653400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:31646000-31647800	Genic enhancers	Primary monocytes fromperipheralblood	blood
18	chr15:31646000-31648000	Genic enhancers	Dnd41	blood
19	chr15:31646000-31648200	Genic enhancers	Primary mononuclear cells fromperipheralblood	Blood
20	chr15:31646000-31655200	Weak transcription	A549	lung
21	chr15:31646000-31659800	Weak transcription	Fetal Kidney	kidney
22	chr15:31646200-31648000	Genic enhancers	Fetal Intestine Small	intestine
23	chr15:31646200-31648400	Genic enhancers	Primary B cells from peripheral blood	blood
24	chr15:31646200-31648600	Genic enhancers	Primary T cells fromperipheralblood	blood
25	chr15:31646200-31648800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:31646200-31648800	Genic enhancers	Fetal Thymus	thymus
27	chr15:31646200-31649000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:31646200-31650800	Enhancers	Brain Substantia Nigra	brain
29	chr15:31646200-31655600	Enhancers	Right Ventricle	heart
30	chr15:31646200-31657400	Enhancers	Brain Anterior Caudate	brain
31	chr15:31646400-31647800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:31646400-31648000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:31646400-31648000	Genic enhancers	Thymus	Thymus
34	chr15:31646400-31648200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:31646400-31648400	Enhancers	Adipose Nuclei	Adipose
36	chr15:31646400-31648600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr15:31646400-31648800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr15:31646400-31649000	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr15:31646400-31649000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr15:31646400-31649000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr15:31646400-31649000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:31646400-31649000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
43	chr15:31646400-31649000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:31646400-31651800	Weak transcription	K562	blood
45	chr15:31646400-31653000	Weak transcription	HMEC	breast
46	chr15:31646400-31653400	Weak transcription	Aorta	Aorta
47	chr15:31646400-31655000	Enhancers	Fetal Heart	heart
48	chr15:31646400-31657400	Enhancers	Brain Cingulate Gyrus	brain
49	chr15:31646600-31647800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
50	chr15:31646600-31648000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links