Variant report

Variant rs561525
Chromosome Location chr2:31608855-31608856
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:33 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:31548000-31634600 Weak transcription Pancreatic Islets Pancreatic Islet
2 chr2:31565200-31633000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr2:31574600-31636600 Weak transcription Colonic Mucosa Colon
4 chr2:31586000-31613000 Weak transcription Small Intestine intestine
5 chr2:31598400-31639000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr2:31599600-31636600 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr2:31602200-31613400 Strong transcription Duodenum Mucosa Duodenum
8 chr2:31602800-31614200 Strong transcription Liver Liver
9 chr2:31603000-31612000 Strong transcription Fetal Intestine Large intestine
10 chr2:31603000-31612400 Strong transcription Fetal Intestine Small intestine
11 chr2:31604200-31609400 Enhancers Placenta Placenta
12 chr2:31604600-31609800 Enhancers Primary monocytes fromperipheralblood blood
13 chr2:31605200-31609000 Weak transcription Duodenum Smooth Muscle Duodenum
14 chr2:31605200-31609600 Genic enhancers HMEC breast
15 chr2:31605200-31612600 Genic enhancers NHEK skin
16 chr2:31605400-31609600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
17 chr2:31606200-31609200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
18 chr2:31606200-31610600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr2:31606600-31612600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
20 chr2:31607800-31609200 Weak transcription GM12878-XiMat blood
21 chr2:31607800-31609400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
22 chr2:31607800-31609400 Enhancers Hela-S3 cervix
23 chr2:31607800-31614400 Enhancers Breast Myoepithelial Primary Cells Breast
24 chr2:31608000-31609200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr2:31608000-31609400 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr2:31608200-31609400 Weak transcription Primary hematopoietic stem cells short term culture blood
27 chr2:31608400-31609800 Enhancers Monocytes-CD14+_RO01746 blood
28 chr2:31608600-31609400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
29 chr2:31608600-31609400 Enhancers Spleen Spleen
30 chr2:31608800-31609200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
31 chr2:31608800-31609200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr2:31608800-31609400 Weak transcription A549 lung
33 chr2:31608800-31612000 Weak transcription Esophagus oesophagus

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