Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1070909	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1152746	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1231726	0.89[EUR][1000 genomes]
rs1231728	0.89[EUR][1000 genomes]
rs1231729	0.82[EUR][1000 genomes]
rs1231735	0.82[EUR][1000 genomes]
rs1231738	0.89[EUR][1000 genomes]
rs1231746	0.81[EUR][1000 genomes]
rs1231747	0.81[EUR][1000 genomes]
rs1231749	0.81[EUR][1000 genomes]
rs1231751	0.81[EUR][1000 genomes]
rs1231759	0.84[EUR][1000 genomes]
rs1231760	0.84[EUR][1000 genomes]
rs1231762	0.82[EUR][1000 genomes]
rs1231766	0.82[EUR][1000 genomes]
rs1231767	0.93[ASN][1000 genomes]
rs1234723	0.84[EUR][1000 genomes]
rs2473744	0.82[EUR][1000 genomes]
rs2473745	0.82[EUR][1000 genomes]
rs2487284	0.82[EUR][1000 genomes]
rs2746068	0.81[EUR][1000 genomes]
rs710142	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs710144	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs710145	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs710146	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs863604	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192781000-192795000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr1:192781400-192803400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:192781800-192795200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:192782000-192794400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr1:192792800-192794000	Enhancers	Hela-S3	cervix
6	chr1:192793200-192794000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search: