Variant report

Variant	rs710142
Chromosome Location	chr1:192797014-192797015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:192777758..192779737-chr1:192794166..192797131,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000116741	Chromatin interaction

Extended variants
information (count: 80 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs1070909	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1152746	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1231726	0.89[EUR][1000 genomes]
rs1231727	0.99[EUR][1000 genomes]
rs1231728	0.89[EUR][1000 genomes]
rs1231729	0.82[EUR][1000 genomes]
rs1231730	0.91[EUR][1000 genomes]
rs1231731	0.91[EUR][1000 genomes]
rs1231732	0.91[EUR][1000 genomes]
rs1231733	0.91[EUR][1000 genomes]
rs1231734	0.91[EUR][1000 genomes]
rs1231735	0.82[EUR][1000 genomes]
rs1231736	0.91[EUR][1000 genomes]
rs1231737	0.99[EUR][1000 genomes]
rs1231738	0.89[EUR][1000 genomes]
rs1231739	0.99[EUR][1000 genomes]
rs1231740	0.99[EUR][1000 genomes]
rs1231741	0.99[EUR][1000 genomes]
rs1231742	0.99[EUR][1000 genomes]
rs1231744	0.95[EUR][1000 genomes]
rs1231746	0.81[EUR][1000 genomes]
rs1231747	0.81[EUR][1000 genomes]
rs1231749	0.81[EUR][1000 genomes]
rs1231750	0.91[EUR][1000 genomes]
rs1231751	0.81[EUR][1000 genomes]
rs1231757	0.94[EUR][1000 genomes]
rs1231758	0.94[EUR][1000 genomes]
rs1231759	0.84[EUR][1000 genomes]
rs1231760	0.84[EUR][1000 genomes]
rs1231762	0.82[EUR][1000 genomes]
rs1231763	0.92[EUR][1000 genomes]
rs1231764	0.92[EUR][1000 genomes]
rs1231765	0.92[EUR][1000 genomes]
rs1231766	0.82[EUR][1000 genomes]
rs1231767	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1234722	0.91[EUR][1000 genomes]
rs1234723	0.84[EUR][1000 genomes]
rs1237767	0.98[EUR][1000 genomes]
rs12756049	0.85[EUR][1000 genomes]
rs12757265	0.87[EUR][1000 genomes]
rs12758285	0.87[EUR][1000 genomes]
rs12758449	0.87[EUR][1000 genomes]
rs1535034	0.92[EUR][1000 genomes]
rs1620819	0.88[EUR][1000 genomes]
rs1623376	0.88[EUR][1000 genomes]
rs1737981	0.82[EUR][1000 genomes]
rs17524307	0.88[EUR][1000 genomes]
rs17524545	0.88[EUR][1000 genomes]
rs2473740	0.91[EUR][1000 genomes]
rs2473741	0.97[EUR][1000 genomes]
rs2473742	0.98[EUR][1000 genomes]
rs2473744	0.82[EUR][1000 genomes]
rs2473745	0.82[EUR][1000 genomes]
rs2487284	0.82[EUR][1000 genomes]
rs2487288	0.91[EUR][1000 genomes]
rs2746068	0.81[EUR][1000 genomes]
rs2797395	0.91[EUR][1000 genomes]
rs34424396	0.87[EUR][1000 genomes]
rs34562719	0.87[EUR][1000 genomes]
rs35040499	0.87[EUR][1000 genomes]
rs35471066	0.86[EUR][1000 genomes]
rs35845034	0.88[EUR][1000 genomes]
rs35879519	0.87[EUR][1000 genomes]
rs4098556	0.88[EUR][1000 genomes]
rs4451535	0.88[EUR][1000 genomes]
rs56155184	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60756700	0.88[EUR][1000 genomes]
rs710144	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs710145	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs710146	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs842922	0.99[EUR][1000 genomes]
rs842923	0.99[EUR][1000 genomes]
rs842924	0.98[EUR][1000 genomes]
rs844529	0.98[EUR][1000 genomes]
rs859888	0.98[EUR][1000 genomes]
rs859890	0.99[EUR][1000 genomes]
rs863604	0.89[EUR][1000 genomes]
rs949982	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192781400-192803400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:192795000-192797400	Enhancers	Hela-S3	cervix
3	chr1:192795400-192797400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:192795400-192797800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:192795400-192809000	Weak transcription	Placenta	Placenta
6	chr1:192795600-192797400	Weak transcription	Aorta	Aorta
7	chr1:192795800-192799800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr1:192796200-192800200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:192796200-192803400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:192796200-192807000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:192796400-192799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:192796600-192797200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:192796600-192800200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr1:192796600-192800200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:192796600-192800200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:192796600-192800400	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr1:192796600-192803000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:192796600-192803600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:192796800-192800200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:192796800-192800600	Weak transcription	NHEK	skin
21	chr1:192796800-192802800	Weak transcription	HMEC	breast
22	chr1:192797000-192797800	Weak transcription	A549	lung
23	chr1:192797000-192799600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:192797000-192800400	Weak transcription	NH-A	brain
25	chr1:192797000-192800400	Weak transcription	Osteobl	bone

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