Variant report

Variant	rs1737981
Chromosome Location	chr1:192861690-192861691
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1070909	0.81[EUR][1000 genomes]
rs1152746	0.82[EUR][1000 genomes]
rs1231727	0.84[EUR][1000 genomes]
rs1231729	0.81[EUR][1000 genomes]
rs1231730	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231731	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231732	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231733	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231734	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231735	0.81[EUR][1000 genomes]
rs1231736	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231737	0.84[EUR][1000 genomes]
rs1231739	0.84[EUR][1000 genomes]
rs1231740	0.84[EUR][1000 genomes]
rs1231741	0.84[EUR][1000 genomes]
rs1231742	0.84[EUR][1000 genomes]
rs1231744	0.82[EUR][1000 genomes]
rs1231746	0.83[EUR][1000 genomes]
rs1231747	0.83[EUR][1000 genomes]
rs1231749	0.83[EUR][1000 genomes]
rs1231750	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1231751	0.83[EUR][1000 genomes]
rs1231754	0.84[EUR][1000 genomes]
rs1231757	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1231758	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1231762	0.82[EUR][1000 genomes]
rs1231763	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231764	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231765	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1231766	0.82[EUR][1000 genomes]
rs1231767	0.83[EUR][1000 genomes]
rs1234722	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1237767	0.83[EUR][1000 genomes]
rs12733094	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12756049	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12756953	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12757265	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12758285	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12758449	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1535034	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1620819	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1623376	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16834948	0.85[EUR][1000 genomes]
rs17524307	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17524545	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17590238	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1890973	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2473740	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2473741	0.82[EUR][1000 genomes]
rs2473742	0.83[EUR][1000 genomes]
rs2473744	0.81[EUR][1000 genomes]
rs2473745	0.82[EUR][1000 genomes]
rs2487284	0.82[EUR][1000 genomes]
rs2487288	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2746068	0.83[EUR][1000 genomes]
rs2797395	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34120198	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34424396	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34562719	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34732347	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34838432	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34867585	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35040499	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35471066	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35845034	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35879519	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35997646	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs36005848	0.84[EUR][1000 genomes]
rs4098556	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4332340	0.85[EUR][1000 genomes]
rs4451535	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4658075	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58739396	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60382150	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60756700	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6686024	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6692203	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs710142	0.82[EUR][1000 genomes]
rs842922	0.84[EUR][1000 genomes]
rs842923	0.84[EUR][1000 genomes]
rs842924	0.83[EUR][1000 genomes]
rs844529	0.83[EUR][1000 genomes]
rs859888	0.83[EUR][1000 genomes]
rs859890	0.84[EUR][1000 genomes]
rs949982	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	esv3390055	chr1:192859229-192863127	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3340601	chr1:192859679-192862977	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv3452627	chr1:192860269-192862031	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3526514	chr1:192860287-192862115	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv3526511	chr1:192860298-192862004	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
8	esv3452625	chr1:192860325-192861996	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
9	esv3526513	chr1:192860349-192861995	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
10	esv3452626	chr1:192860386-192861931	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
11	esv3526512	chr1:192860397-192861930	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
12	esv3452628	chr1:192860401-192861928	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv3526515	chr1:192860401-192861928	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	esv1804510	chr1:192860407-192861751	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1804742	chr1:192860407-192861751	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	esv1805164	chr1:192860407-192861751	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv1806277	chr1:192860407-192861751	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv1809058	chr1:192860407-192861751	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
19	esv1809759	chr1:192860407-192861751	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv1811431	chr1:192860407-192861751	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv1811884	chr1:192860407-192861751	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv1829802	chr1:192860407-192861751	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv20998	chr1:192860431-192861926	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192843800-192861800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:192860600-192861800	Weak transcription	Rectal Smooth Muscle	rectum
3	chr1:192860800-192862000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:192860800-192862000	Weak transcription	Colon Smooth Muscle	Colon
5	chr1:192860800-192863200	Enhancers	HMEC	breast

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